| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,666,904 – 3,667,007 |
| Length | 103 |
| Max. P | 0.841873 |
| Location | 3,666,904 – 3,667,007 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 86.17 |
| Shannon entropy | 0.25822 |
| G+C content | 0.42486 |
| Mean single sequence MFE | -30.02 |
| Consensus MFE | -23.06 |
| Energy contribution | -23.30 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.841873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3666904 103 - 22422827 -UCUUUCGCUUUACUCUUUGGUUUGCGCUUCGUUUCGGCUGCGCGUGUUUUUCGUUUCAGUUAUUAUUGAGACUAAAAAUGCGGCGUGAGAUUUGAUUGUGAGU -((((.((((..............((((.(((...)))..))))((((((((.((((((((....)))))))).)))))))))))).))))............. ( -28.90, z-score = -1.48, R) >droSim1.chrX 2684095 103 - 17042790 -UCUUUCGCUCUACUCUUUGGUUUGCGCUUCGUUUCGGCUGCGCGUGUUUUUCGUUUCAGUUAUUAUUGAGACUAAAAAUGCGGCGUGAGAUUUGAUUGUGAGU -((((.((((..............((((.(((...)))..))))((((((((.((((((((....)))))))).)))))))))))).))))............. ( -28.90, z-score = -1.36, R) >droSec1.super_4 3142808 103 + 6179234 -UCUUGCGCUCUACUCUUUGGUUUGCGCUUCGUUUCGGCUGCGCGUAUUUUUCGUUUCAGUUAUUAUUGAGACUAAAAAUGCGGCGUGAGAUUUGAUUGUGAGU -(((..((((..............((((.(((...)))..))))((((((((.((((((((....)))))))).))))))))))))..)))............. ( -33.60, z-score = -2.76, R) >dp4.chrXL_group1e 4018645 93 + 12523060 -----------UUUUAUUUGGUUUGCGCUUCGUUUUGGCUGCGCGUGUUUUUCGUUUCAGUUAUUAUUGAGACUAAAAAUGCGGCGUGAGAUUUGAUUGUGAGU -----------..........((..((..(((.(((.((.((.(((((((((.((((((((....)))))))).))))))))))))).)))..))).))..)). ( -25.10, z-score = -1.68, R) >droWil1.scaffold_181096 11763309 101 - 12416693 GUUGUUGCUUUUGCCUCUUAGCGCG---UUCGCUGGGGCCGCGCGUGUUUUUCGUUUCAGUUAUUAUUGAGACUAAAAAUGCGGCGUGAGAUUUGAUUGUGAGU ....(..(..(((((((..((((..---..)))))))))(((((((((((((.((((((((....)))))))).)))))))).)))))......))..)..).. ( -33.60, z-score = -2.07, R) >consensus _UCUUUCGCUCUACUCUUUGGUUUGCGCUUCGUUUCGGCUGCGCGUGUUUUUCGUUUCAGUUAUUAUUGAGACUAAAAAUGCGGCGUGAGAUUUGAUUGUGAGU .....................((((((..(((..((...(((.(((((((((.((((((((....)))))))).))))))))))))...))..))).)))))). (-23.06 = -23.30 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:12 2011