| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,665,165 – 3,665,297 |
| Length | 132 |
| Max. P | 0.839242 |
| Location | 3,665,165 – 3,665,265 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 85.42 |
| Shannon entropy | 0.19284 |
| G+C content | 0.49513 |
| Mean single sequence MFE | -31.40 |
| Consensus MFE | -20.71 |
| Energy contribution | -21.27 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3665165 100 + 22422827 UUCGAAUCGACUGGACUAUGACAGUCAGCCGAUAAAGAUGAUCGGGCCUAAGAGUCGGUCAAAUAAUGUCGGUGGUUGGCAGGGGUGGGGUGUGUACCCU ..(.(((((((((........))))).(((((((....(((((((.(......)))))))).....))))))))))).)..((((((.......)))))) ( -30.90, z-score = -0.72, R) >droSim1.chrX 2682427 86 + 17042790 UUCGAAU--ACUG-ACUAUGACAGUCAGCCGAUAAAGAUGAUCGG-CCUAAGAGUCGGUCAAAUAAUGUCGGU---UGGAAGGGGUGUACCCC------- (((((..--.(((-(((.....))))))((((((....(((((((-(......)))))))).....)))))))---)))).((((....))))------- ( -31.00, z-score = -3.47, R) >droSec1.super_4 3141165 88 - 6179234 UUCGAAUCGACUG-ACUAUGACAGUCAGCCGAUAAAGAUGAUCGG-CCUAAGAGUCGGUCAAAUAAUGUCGGU---UGGAAGGGGUGUACCCC------- (((.(((((((((-(((.....)))))...........(((((((-(......))))))))......))))))---).)))((((....))))------- ( -32.30, z-score = -3.38, R) >consensus UUCGAAUCGACUG_ACUAUGACAGUCAGCCGAUAAAGAUGAUCGG_CCUAAGAGUCGGUCAAAUAAUGUCGGU___UGGAAGGGGUGUACCCC_______ ........(((((........))))).(((((((....(((((((.(......)))))))).....)))))))........((((....))))....... (-20.71 = -21.27 + 0.56)
| Location | 3,665,186 – 3,665,297 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 90.00 |
| Shannon entropy | 0.13237 |
| G+C content | 0.51771 |
| Mean single sequence MFE | -33.83 |
| Consensus MFE | -28.12 |
| Energy contribution | -27.90 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.839242 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3665186 111 + 22422827 CAGUCAGCCGAUAAAGAUGAUCGGGCCUAAGAGUCGGUCAAAUAAUGUCGGUGGUUGGCAGGGGUGGGGUGUGUACCCUGAGUCGAGUUGAGUCACCAACUACACUACAUG ..(((((((((((....(((((((.(......)))))))).....)))))))...)))).(..(((((((....)))).......(((((......))))).)))..)... ( -31.70, z-score = 0.16, R) >droSim1.chrX 2682445 98 + 17042790 CAGUCAGCCGAUAAAGAUGAUCGG-CCUAAGAGUCGGUCAAAUAAUGUCGGU---UGGAAGGGGUG-------UACCCCGAGUCGAGUUGAGUCACCAGC--CACUACAUG ...((((((((((....(((((((-(......)))))))).....)))))))---)))..((((..-------..)))).(((.(.((((......))))--))))..... ( -34.90, z-score = -3.17, R) >droSec1.super_4 3141185 98 - 6179234 CAGUCAGCCGAUAAAGAUGAUCGG-CCUAAGAGUCGGUCAAAUAAUGUCGGU---UGGAAGGGGUG-------UACCCCGAGUCGAGUUGAGUCACCAAC--CACUACAUG ...((((((((((....(((((((-(......)))))))).....)))))))---)))..((((..-------..)))).(((.(.((((......))))--))))..... ( -34.90, z-score = -3.23, R) >consensus CAGUCAGCCGAUAAAGAUGAUCGG_CCUAAGAGUCGGUCAAAUAAUGUCGGU___UGGAAGGGGUG_______UACCCCGAGUCGAGUUGAGUCACCAAC__CACUACAUG .(((..(((((((....(((((((.(......)))))))).....)))))))...(((..((((((.......))))))((.((.....)).)).))).....)))..... (-28.12 = -27.90 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:11 2011