| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,665,051 – 3,665,125 |
| Length | 74 |
| Max. P | 0.911905 |
| Location | 3,665,051 – 3,665,125 |
|---|---|
| Length | 74 |
| Sequences | 6 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 79.54 |
| Shannon entropy | 0.37295 |
| G+C content | 0.47721 |
| Mean single sequence MFE | -18.09 |
| Consensus MFE | -14.93 |
| Energy contribution | -15.10 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.911905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3665051 74 + 22422827 GCCGAUUUACAGGGAAACAAACGGGUUGUGUUUAACCCACAGCCAAAAGGCAAUCGAAGGCGGCUAUCCUGACU ((((.(((....(....)....((((((....))))))...(((....)))....)))..)))).......... ( -21.00, z-score = -1.29, R) >droSim1.chrX 2682327 71 + 17042790 AUACAUUUACAGGGAAACAAACGGGUUGUGUUUAACCCACAGCCAAAAGGCAAUCGAAGGC---UAUCCUGACU .........(((((........((((((....))))))...(((....)))..........---..)))))... ( -19.30, z-score = -2.22, R) >droSec1.super_4 3141059 70 - 6179234 GCCGAUUUACAGGGAAACAAACGGGUUGUGUU-AACCCACAGCCAAAAGGCAAUCGAAGGC---UAUCCUGACU .........(((((.........(((((((..-....)))))))....(((........))---).)))))... ( -18.50, z-score = -1.31, R) >droYak2.chrX 17023903 67 - 21770863 GCCAAUUUACAGGGAAAC----GGGUUGUGCUUAACCCACAGCCAAAAGGCAAUCGAAGGC---UAUCCUGAAU .........(((((....----((((((....))))))...(((....)))..........---..)))))... ( -19.30, z-score = -1.69, R) >droEre2.scaffold_4690 1054607 70 + 18748788 GCCGAUUUACAGGGAAAC----GGGUUGUACUUAACCCACAGCCAAAAGUCAAACGAAGGCGGCUAUCCUGAAU .........(((((....----((((((....))))))..((((....(((.......))))))).)))))... ( -20.10, z-score = -2.01, R) >droAna3.scaffold_13047 119162 67 + 1816235 ACCGAUUCUCUGGAAAAC----GAGUUGCCUCCAGCUGAAAGCCAAAAAGCCACCAAAGCU---UGUCCUGAAU ....((((...(((...(----(((((.......(((...........)))......))))---))))).)))) ( -10.32, z-score = 0.06, R) >consensus GCCGAUUUACAGGGAAAC____GGGUUGUGUUUAACCCACAGCCAAAAGGCAAUCGAAGGC___UAUCCUGAAU .........(((((........((((((....))))))...(((....)))...............)))))... (-14.93 = -15.10 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:10 2011