| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,658,233 – 3,658,307 |
| Length | 74 |
| Max. P | 0.993502 |
| Location | 3,658,233 – 3,658,307 |
|---|---|
| Length | 74 |
| Sequences | 4 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 78.85 |
| Shannon entropy | 0.33820 |
| G+C content | 0.41624 |
| Mean single sequence MFE | -16.34 |
| Consensus MFE | -10.64 |
| Energy contribution | -11.95 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.98 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.62 |
| SVM RNA-class probability | 0.993502 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3658233 74 + 22422827 UAGCAGUCCAACAAAAUUCUGUAUUCAGAUACAAACGUAUCUGUGUCCGGGCCACUAUCUGUAUCUGUUGUAUC ((((((..((.......((((.((.(((((((....))))))).)).))))........))...)))))).... ( -15.36, z-score = -1.72, R) >droSim1.chrX 15143229 71 + 17042790 CAAGAGCCCAACGAAAUUCUGUAUUCAGAUACAAACGUAUCUGUGUCCGGGCCUCUAUCUUUAUCUGUAUC--- ..(((((((.(((......)))...(((((((....))))))).....))).))))...............--- ( -17.70, z-score = -3.01, R) >droSec1.super_4 3134658 71 - 6179234 CAAGAGCCCAACAAAAUUCUGUAUUCAGAUACAAACGUAUCUGUGUCCGGGCCUCUAUCUUUAUCUGUAUC--- ..(((((((.(((......)))...(((((((....))))))).....))).))))...............--- ( -18.40, z-score = -3.93, R) >droEre2.scaffold_4690 1044642 63 + 18748788 CAAGAGCCCAAACGG--------CUCAGAUACAAACGUAUCUGUAUUCGUACCUCUAUCUUUCUCUGUAUC--- ...(((((.....))--------)))((((((....)))))).............................--- ( -13.90, z-score = -3.27, R) >consensus CAAGAGCCCAACAAAAUUCUGUAUUCAGAUACAAACGUAUCUGUGUCCGGGCCUCUAUCUUUAUCUGUAUC___ ..(((((((.(((......)))...(((((((....))))))).....))).)))).................. (-10.64 = -11.95 + 1.31)
| Location | 3,658,233 – 3,658,307 |
|---|---|
| Length | 74 |
| Sequences | 4 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 78.85 |
| Shannon entropy | 0.33820 |
| G+C content | 0.41624 |
| Mean single sequence MFE | -17.43 |
| Consensus MFE | -13.04 |
| Energy contribution | -12.86 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967460 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3658233 74 - 22422827 GAUACAACAGAUACAGAUAGUGGCCCGGACACAGAUACGUUUGUAUCUGAAUACAGAAUUUUGUUGGACUGCUA .................(((..(.(((....(((((((....)))))))...((((....))))))).)..))) ( -15.50, z-score = -1.20, R) >droSim1.chrX 15143229 71 - 17042790 ---GAUACAGAUAAAGAUAGAGGCCCGGACACAGAUACGUUUGUAUCUGAAUACAGAAUUUCGUUGGGCUCUUG ---................((((((((.((.(((((((....)))))))......(.....)))))))).))). ( -18.60, z-score = -2.33, R) >droSec1.super_4 3134658 71 + 6179234 ---GAUACAGAUAAAGAUAGAGGCCCGGACACAGAUACGUUUGUAUCUGAAUACAGAAUUUUGUUGGGCUCUUG ---................((((((((....(((((((....)))))))...((((....))))))))).))). ( -18.40, z-score = -2.48, R) >droEre2.scaffold_4690 1044642 63 - 18748788 ---GAUACAGAGAAAGAUAGAGGUACGAAUACAGAUACGUUUGUAUCUGAG--------CCGUUUGGGCUCUUG ---.................((((((((((........))))))))))(((--------((.....)))))... ( -17.20, z-score = -2.51, R) >consensus ___GAUACAGAUAAAGAUAGAGGCCCGGACACAGAUACGUUUGUAUCUGAAUACAGAAUUUUGUUGGGCUCUUG .................(((..((((((...(((((((....)))))))..............))))))..))) (-13.04 = -12.86 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:09 2011