| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,637,021 – 3,637,085 |
| Length | 64 |
| Max. P | 0.511929 |
| Location | 3,637,021 – 3,637,085 |
|---|---|
| Length | 64 |
| Sequences | 4 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 81.82 |
| Shannon entropy | 0.27751 |
| G+C content | 0.34719 |
| Mean single sequence MFE | -14.93 |
| Consensus MFE | -11.75 |
| Energy contribution | -11.88 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.511929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3637021 64 - 22422827 --------GUGGUGAGGUUUACAAACGUAUAUCCCCUAUUGUAUAUAAACAUACACCACAUUAUACGGGGAU --------((((((..(((((.....(((((........))))).)))))...))))))............. ( -12.90, z-score = -0.01, R) >droSec1.super_4 3121464 64 + 6179234 --------GUGGUGAGGUUUACAAACGUAUAUCCCCUAUUGUAUAUAAACAUACACCACAUUAUACGUUGAU --------((((((..(((((.....(((((........))))).)))))...))))))............. ( -12.90, z-score = -0.83, R) >droYak2.chrX 17000723 61 + 21770863 --------GUGGUGAGGUUUACAAACGUAUAUACCAUA-UAUAUAUAAACAUACACCACAUUAUACAUUA-- --------((((((..(((((.....(((((((...))-))))).)))))...))))))...........-- ( -13.60, z-score = -2.37, R) >droEre2.scaffold_4690 1030720 69 - 18748788 GUGUGUGUGUGGUGGGGUUUACAAUCGUAUAUCCCCUA---UAUAUAAACAUACACCACAUUCUACAGCAAU (((.(((((((..((((..(((....)))...))))..---........))))))))))............. ( -20.30, z-score = -1.85, R) >consensus ________GUGGUGAGGUUUACAAACGUAUAUCCCCUA_UGUAUAUAAACAUACACCACAUUAUACAGUAAU ........((((((..((((......((((((........))))))))))...))))))............. (-11.75 = -11.88 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:07 2011