| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,630,303 – 3,630,407 |
| Length | 104 |
| Max. P | 0.700328 |
| Location | 3,630,303 – 3,630,407 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 68.05 |
| Shannon entropy | 0.57369 |
| G+C content | 0.38368 |
| Mean single sequence MFE | -23.00 |
| Consensus MFE | -10.32 |
| Energy contribution | -11.96 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.700328 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3630303 104 + 22422827 AAUAUCGAUGAUUUGGUCGGAAUGGUUAUCGAUAAUAACUGAAUACUUUUUCAUCG-UCUGCCAUAAUUU-UUGGGGGCCACUGUGCUAGCCAAACUAUUGAAAUG ....((((((.((((((..(.(((((.............((((......))))..(-(((.(((......-.))))))).))))).)..)))))).)))))).... ( -23.30, z-score = -1.08, R) >droWil1.scaffold_180697 2218325 97 - 4168966 ACUAUAGAUGGUUCCAUCGAAAAUUUAAACGUUAUUAUCGAAAAA--UUUCCAUCGAUUUAUCGCAC----UCCAUCGAUUCCAAGUUGGCCAAGUUUU---AAUG ......((((....)))).(((((((....((.((.(((((....--......)))))..)).))..----.(((.(........).)))..)))))))---.... ( -11.70, z-score = 0.54, R) >droEre2.scaffold_4690 1023612 101 + 18748788 AGUAUCGAUGUUUUGGUUAG----GUCAUCGAUGAUAACUGAAUACGUUUUCAUCG-UCUGCCACAUUAUUUUGGGGGCCACUGUGCAGACUAAACUAUUGAAAUG ....((((((.((((((..(----(((..((((((.(((.......))).))))))-....((.((......)))))))).((....)))))))).)))))).... ( -24.50, z-score = -1.06, R) >droYak2.chrX 16993988 88 - 21770863 AGUAUCGAUGUUUUGGUUAG----GCCAUCGAUGAUAACUAAGUACAUUCUCAUCG-U-------------UUGGGGGCCACUGUGCUAGCCAAAAUAUUGAAAUG ....((((((((((((((((----.(((.((((((...............))))))-.-------------.)))((....))...)))))))))))))))).... ( -28.86, z-score = -3.43, R) >droSec1.super_4 3113995 103 - 6179234 AGUAUCGAUGAUUUGGUCGGAAUGGUUAUCGAUGAUAACUGAAUACUUUUUCAUCG-UCUGCCAUAAAA--UUGGGGGCCACUGUGCUAGCCAAACUAUUGAAAUG ....((((((.((((((..(.(((((....(((((...............)))))(-(((.(((.....--.))))))).))))).)..)))))).)))))).... ( -26.66, z-score = -1.73, R) >consensus AGUAUCGAUGAUUUGGUCGGAA__GUCAUCGAUGAUAACUGAAUACUUUUUCAUCG_UCUGCCACAA____UUGGGGGCCACUGUGCUAGCCAAACUAUUGAAAUG ....((((((.(((((((((....(((..((((((...............)))))).....(((........))).))).......))))))))).)))))).... (-10.32 = -11.96 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:05 2011