| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,614,146 – 3,614,220 |
| Length | 74 |
| Max. P | 0.924330 |
| Location | 3,614,146 – 3,614,220 |
|---|---|
| Length | 74 |
| Sequences | 7 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 65.86 |
| Shannon entropy | 0.65699 |
| G+C content | 0.51559 |
| Mean single sequence MFE | -26.03 |
| Consensus MFE | -12.67 |
| Energy contribution | -12.93 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.76 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3614146 74 - 22422827 ------UGGGUUUGUGGCGUGGCACUGUCGGC--ACGACACUUAAGGGUUAAGGUUAAGGGCCAAUCGCCAUGAUUCCCAAA ------((((.(..(((((((((.((((((..--.)))).((((.....))))....)).))))..)))))..)..)))).. ( -27.60, z-score = -2.04, R) >droAna3.scaffold_13047 69566 69 - 1816235 ---------UUUGCUGCUGCUGCACGGGCACC--AUAUAGUUAAGUGGCUAAGGCCAU--GCCAGAGGCUAUAUUUUGGUUA ---------...(((((....))...)))(((--((((((((..(((((....)))))--......)))))))...)))).. ( -17.20, z-score = 1.51, R) >droEre2.scaffold_4690 1010551 74 - 18748788 ------GGGUUUUGUGGCGUGGCACUGUCGGC--ACGGCACUGAAGGGUUAAGGUUAAGGGCCAAUCGCCAUGAUACCCAAA ------((((.(..(((((((((.((...(((--.(...(((....)))...))))..))))))..)))))..).))))... ( -27.10, z-score = -1.34, R) >droYak2.chrX 16981291 74 + 21770863 ------UGGGUUUGUGGCGUGGCACUGUCGGC--ACGGCACUGAUGGGUUAAGGUUAAGGGCCCAUCGCCAUGAUACCCAAA ------((((((..(((((((.(......).)--))......((((((((.........))))))))))))..).))))).. ( -32.60, z-score = -2.44, R) >droSec1.super_4 3096410 74 + 6179234 ------UGGGUUUGUGGCGUGGCACUGUCGGC--ACGGCACUUAAGGGUUAAGGUUAAGGGCCAAUCGCCAUGAUUCCUAAA ------((((.(..(((((((.(......).)--))(((.(((((.........))))).)))....))))..)..)))).. ( -25.20, z-score = -1.33, R) >droSim1.chrX 2653327 74 - 17042790 ------UGGGUUUGUGGCGUGGCACUGUCGGC--ACGGCACUUAAGGGUUAAGGUUAAGGGCCAAUCGCCAUGAUUCCCAAA ------((((.(..(((((((.(......).)--))(((.(((((.........))))).)))....))))..)..)))).. ( -27.50, z-score = -1.66, R) >droVir3.scaffold_12970 6891666 82 - 11907090 UAAGUUUGUCUUUUUGCUUUGCAGCUGCAAUCCGUUGUUGCUGGAGAGGCAGCUUGUUUGGCUAACAACAGAAACAAACAAA ...((((((.(((..(((..((((((((..(((((....)).)))...))))).)))..))).......))).))))))... ( -25.00, z-score = -1.17, R) >consensus ______UGGGUUUGUGGCGUGGCACUGUCGGC__ACGGCACUGAAGGGUUAAGGUUAAGGGCCAAUCGCCAUGAUUCCCAAA .......((..((((((((((((...((((.....))))(((....)))...........))))..))))))))..)).... (-12.67 = -12.93 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:03 2011