| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,613,993 – 3,614,076 |
| Length | 83 |
| Max. P | 0.886527 |
| Location | 3,613,993 – 3,614,076 |
|---|---|
| Length | 83 |
| Sequences | 6 |
| Columns | 85 |
| Reading direction | reverse |
| Mean pairwise identity | 76.17 |
| Shannon entropy | 0.46141 |
| G+C content | 0.40499 |
| Mean single sequence MFE | -19.14 |
| Consensus MFE | -9.02 |
| Energy contribution | -11.05 |
| Covariance contribution | 2.03 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.886527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3613993 83 - 22422827 ACACGAACGCACACACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUUGGUGU-AAA-AAAAAUACCGAAACGAGUGUGCAAAGAA ........((((((.((((....))....................(((((((-...-....)))))))..)).))))))...... ( -19.10, z-score = -2.53, R) >droAna3.scaffold_13047 69436 63 - 1816235 ACA-GAGUGAGACCAAACAGCGGGUGCGCGGUA--UUUCCGCAGGU-GGCGUUAC--GAAAAUACUGCA---------------- ...-..((((..(((....((....))((((..--...))))...)-))..))))--............---------------- ( -14.30, z-score = 0.96, R) >droSim1.chrX 2653173 84 - 17042790 ACACGAACGCACACACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUUGGUGUAAAA-AAAAAUACCGAAACGAGUGUGCAAAGAA ........((((((.((((....))....................(((((((....-....)))))))..)).))))))...... ( -19.40, z-score = -2.67, R) >droSec1.super_4 3096257 83 + 6179234 ACACGAACGCACACACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUUGGUGU-AAA-AAAAAUACCGAAACGAGUGUGCAAAGAA ........((((((.((((....))....................(((((((-...-....)))))))..)).))))))...... ( -19.10, z-score = -2.53, R) >droYak2.chrX 16981139 83 + 21770863 ACACGAACGCACACACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUAGGUAUUAA--AAAAAUACCAAAUCGUGUGCGCAAAGAA .......(((((((..((((..................)))).....((((((..--...)))))).....)))))))....... ( -19.47, z-score = -2.90, R) >droEre2.scaffold_4690 1010397 85 - 18748788 ACACGAACGCACACACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUUGGUGUUAAACAAAAAUACCAAAUUGUGUGUGCAAAGAA ........((((((((((((..................))))...((((((((.......))))))))...))))))))...... ( -23.47, z-score = -3.07, R) >consensus ACACGAACGCACACACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUUGGUGUUAAA_AAAAAUACCGAAACGAGUGUGCAAAGAA ........((((((.((((....))....................(((((((.........)))))))..)).))))))...... ( -9.02 = -11.05 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:02 2011