| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,611,390 – 3,611,445 |
| Length | 55 |
| Max. P | 0.882325 |
| Location | 3,611,390 – 3,611,445 |
|---|---|
| Length | 55 |
| Sequences | 10 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 82.98 |
| Shannon entropy | 0.35903 |
| G+C content | 0.37210 |
| Mean single sequence MFE | -10.54 |
| Consensus MFE | -6.99 |
| Energy contribution | -7.35 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.882325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3611390 55 - 22422827 ---CAAC-UUAGCCUAAUUUAUAGCCAUCAAGCUGUGAUUUGCUCUAAUUUCACUUCUA ---....-((((..(((.(((((((......))))))).)))..))))........... ( -9.40, z-score = -1.85, R) >droEre2.scaffold_4690 1007435 55 - 18748788 ---CAAC-UUAGCCUAAUUUAUAGCCAUCAAGCUGUGAUUUGCUCUAAUUUCACUUCUA ---....-((((..(((.(((((((......))))))).)))..))))........... ( -9.40, z-score = -1.85, R) >droYak2.chrX 16978197 55 + 21770863 ---CAAC-UUAGCCCGAUUUAUAGCCAUCAAGCUGUGAUUUGCUCUAAUUUCACUUCUG ---....-((((..(((.(((((((......))))))).)))..))))........... ( -10.80, z-score = -2.52, R) >droSec1.super_4 3093746 55 + 6179234 ---CAAC-UUAGCCUAAUUUAUAGCCAUCAAGCUGUGAUUUGCUCUAAUUUCACUUCUA ---....-((((..(((.(((((((......))))))).)))..))))........... ( -9.40, z-score = -1.85, R) >droSim1.chrX 2650561 55 - 17042790 ---CAAC-UUAGCCUAAUUUAUAGCCAUCAAGCUGUGAUUUGCUCUAAUUUCACUUCUA ---....-((((..(((.(((((((......))))))).)))..))))........... ( -9.40, z-score = -1.85, R) >dp4.chrXL_group1e 3930229 55 + 12523060 ---CAAC-UUAGCCUAAUUUAUAGCCAUCAAGCUGUGAUUUGGUCUAAUUUCGUGCCUA ---....-((((.((((.(((((((......))))))).)))).))))........... ( -12.70, z-score = -2.36, R) >droPer1.super_22 1673398 55 - 1688296 ---CAAC-UUAGCCUAAUUUAUAGCCAUCAAGCUGUGAUUUGGUCUAAUUUCGUGCCUA ---....-((((.((((.(((((((......))))))).)))).))))........... ( -12.70, z-score = -2.36, R) >droWil1.scaffold_181096 11687147 55 - 12416693 ---CAAC-UUAGCCUAAUUUAUAGCCAUCAGACUGUGAUUUGCUCUAAUUUCAGUUUUA ---....-((((..(((.((((((........)))))).)))..))))........... ( -5.90, z-score = -0.06, R) >droVir3.scaffold_12970 6884117 54 - 11907090 AACCGGCACUAGCCCAAUUUAUAGCCAUCAAGUUGCGAUCUGUGCCAAUUUCUA----- ....(((((...(.((((((.........)))))).)....)))))........----- ( -11.40, z-score = -1.79, R) >droGri2.scaffold_14853 4488714 52 + 10151454 AACUGGCACUAGCCUAAUUUAUAGCCAUCAAGCUGUGAUUUGUGCCAAUUUC------- ...((((((.........(((((((......)))))))...)))))).....------- ( -14.30, z-score = -2.49, R) >consensus ___CAAC_UUAGCCUAAUUUAUAGCCAUCAAGCUGUGAUUUGCUCUAAUUUCACUUCUA ........((((..(((.(((((((......))))))).)))..))))........... ( -6.99 = -7.35 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:59 2011