| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,605,102 – 3,605,155 |
| Length | 53 |
| Max. P | 0.792643 |
| Location | 3,605,102 – 3,605,155 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 94.14 |
| Shannon entropy | 0.10005 |
| G+C content | 0.33592 |
| Mean single sequence MFE | -7.04 |
| Consensus MFE | -7.02 |
| Energy contribution | -6.62 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.03 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.792643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3605102 53 - 22422827 AUUCAAUUCCUCAAUUUAUUGCAAUCGAUGACGACGCAGUGAGCAAAUAAAAA ..............((((((((..(((....))).)))))))).......... ( -7.90, z-score = -0.80, R) >droSim1.chrX 2644937 50 - 17042790 AUUCAAUUCCUCAAUUUACUGCAAUCGAU---GACGCAGUGAGCAAAUAAAAA ..............((((((((.......---...)))))))).......... ( -8.00, z-score = -1.45, R) >droSec1.super_4 3086737 50 + 6179234 AUUCAAUUCCUCAAUUUACUGCAAUCGAU---GACGCAGUGAGCAAAUAAAAA ..............((((((((.......---...)))))))).......... ( -8.00, z-score = -1.45, R) >droYak2.chrX 16971801 50 + 21770863 AUUCAAUUCCUCAAUUUAUUGCAAUCGAU---GACGCAGUGAGCAAAUAAAAA ..............((((((((.......---...)))))))).......... ( -5.70, z-score = -0.22, R) >droEre2.scaffold_4690 1001265 50 - 18748788 AUUCAAUUCCCCAAUUUAUUGCAAUCGAU---GACGCAGUAAGCACAUAAAAA ..............((((((((.......---...)))))))).......... ( -5.60, z-score = -1.26, R) >consensus AUUCAAUUCCUCAAUUUAUUGCAAUCGAU___GACGCAGUGAGCAAAUAAAAA ..............((((((((..((......)).)))))))).......... ( -7.02 = -6.62 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:58 2011