Locus 12957

Sequence ID dm3.chrX
Location 3,600,482 – 3,600,551
Length 69
Max. P 0.906537
window17811

overview

Window 1

Location 3,600,482 – 3,600,551
Length 69
Sequences 5
Columns 69
Reading direction reverse
Mean pairwise identity 90.14
Shannon entropy 0.18086
G+C content 0.40925
Mean single sequence MFE -15.96
Consensus MFE -14.82
Energy contribution -15.02
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.93
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.19
SVM RNA-class probability 0.906537
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 3600482 69 - 22422827
UCUCCAUUCUGUUCGGAAACUAACUUUGUAUCGCUUGUGAGAUGACGGUUCUCUGGUGAAUAAAGGUAG
......((((....)))).(((.((((((.(((((...((((.......)))).))))))))))).))) ( -16.30, z-score =  -1.29, R)
>droEre2.scaffold_4690 996569 69 - 18748788
UAUCCAUUUUGUCCGGAAACUAACUUUGUAUCGCUUGUGAGAAGCCGGUUCUCUGGUGAAUAAAGAUAG
..(((.........)))..(((.((((((.(((((...(((((.....))))).))))))))))).))) ( -16.40, z-score =  -1.71, R)
>droYak2.chrX 16967040 63 + 21770863
------UUGUGUUUGGAAACUAACUUUGUAUCGCUUGUGAGAAUUCGGUUCUCUGGUGAAUAAAGAUAG
------.............(((.((((((.(((((...((((((...)))))).))))))))))).))) ( -15.60, z-score =  -2.83, R)
>droSec1.super_4 3082260 69 + 6179234
UCUCCAUUUUGUCCGGAAACUAACUUUGUAUCGCUUGUGAGAAGCCGGUUCUCUGGUGAAUAAAGGUAG
..(((.........)))..(((.((((((.(((((...(((((.....))))).))))))))))).))) ( -16.20, z-score =  -1.13, R)
>droSim1.chrX 2640466 69 - 17042790
UCUCAAUUUUGUCCGGAAACUAACUUUGUAUCGCUUGUGAGAAGCCGGUUCUCUGGUGAAUAAAGGUAG
..............(....)...((((((.(((((...(((((.....))))).))))))))))).... ( -15.30, z-score =  -0.99, R)
>consensus
UCUCCAUUUUGUCCGGAAACUAACUUUGUAUCGCUUGUGAGAAGCCGGUUCUCUGGUGAAUAAAGGUAG
..............(....)...((((((.(((((...(((((.....))))).))))))))))).... (-14.82 = -15.02 +   0.20) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:57 2011