Sequence ID | dm3.chrX |
---|---|
Location | 3,600,482 – 3,600,551 |
Length | 69 |
Max. P | 0.906537 |
Location | 3,600,482 – 3,600,551 |
---|---|
Length | 69 |
Sequences | 5 |
Columns | 69 |
Reading direction | reverse |
Mean pairwise identity | 90.14 |
Shannon entropy | 0.18086 |
G+C content | 0.40925 |
Mean single sequence MFE | -15.96 |
Consensus MFE | -14.82 |
Energy contribution | -15.02 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.59 |
Structure conservation index | 0.93 |
Background model | dinucleotide |
Decision model | sequence based alignment quality |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.906537 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3600482 69 - 22422827 UCUCCAUUCUGUUCGGAAACUAACUUUGUAUCGCUUGUGAGAUGACGGUUCUCUGGUGAAUAAAGGUAG ......((((....)))).(((.((((((.(((((...((((.......)))).))))))))))).))) ( -16.30, z-score = -1.29, R) >droEre2.scaffold_4690 996569 69 - 18748788 UAUCCAUUUUGUCCGGAAACUAACUUUGUAUCGCUUGUGAGAAGCCGGUUCUCUGGUGAAUAAAGAUAG ..(((.........)))..(((.((((((.(((((...(((((.....))))).))))))))))).))) ( -16.40, z-score = -1.71, R) >droYak2.chrX 16967040 63 + 21770863 ------UUGUGUUUGGAAACUAACUUUGUAUCGCUUGUGAGAAUUCGGUUCUCUGGUGAAUAAAGAUAG ------.............(((.((((((.(((((...((((((...)))))).))))))))))).))) ( -15.60, z-score = -2.83, R) >droSec1.super_4 3082260 69 + 6179234 UCUCCAUUUUGUCCGGAAACUAACUUUGUAUCGCUUGUGAGAAGCCGGUUCUCUGGUGAAUAAAGGUAG ..(((.........)))..(((.((((((.(((((...(((((.....))))).))))))))))).))) ( -16.20, z-score = -1.13, R) >droSim1.chrX 2640466 69 - 17042790 UCUCAAUUUUGUCCGGAAACUAACUUUGUAUCGCUUGUGAGAAGCCGGUUCUCUGGUGAAUAAAGGUAG ..............(....)...((((((.(((((...(((((.....))))).))))))))))).... ( -15.30, z-score = -0.99, R) >consensus UCUCCAUUUUGUCCGGAAACUAACUUUGUAUCGCUUGUGAGAAGCCGGUUCUCUGGUGAAUAAAGGUAG ..............(....)...((((((.(((((...(((((.....))))).))))))))))).... (-14.82 = -15.02 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:57 2011