| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,588,572 – 3,588,677 |
| Length | 105 |
| Max. P | 0.500000 |
| Location | 3,588,572 – 3,588,677 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 62.18 |
| Shannon entropy | 0.64683 |
| G+C content | 0.32643 |
| Mean single sequence MFE | -21.51 |
| Consensus MFE | -7.16 |
| Energy contribution | -8.00 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 3588572 105 - 22422827 UUAUUUUAAAUGACGAUUAGUUUACUUUCCAUAGGUGUCUGGUUCGUCUUCUAUGUGGGAAUAACUCUUUAUCUAUAUUUGUGUGUAUGUAUGCAUGUAUACAAG-------- ...........(((((((((..(((((.....))))).)))).)))))....(((((((.(........).)))))))(((((((((((....))))))))))).-------- ( -21.20, z-score = -1.30, R) >droYak2.chrX 16954060 112 + 21770863 UUAGUUUAAAUGUCUAUAAGCUUGCAUACCAUAGGUGUCUGUAAUGUGUUCUAUG-UAAAAUUACUCUAUAUCUAUAUAUGUAUGUGUGUAAAAAUGUACAUAUGUGCACAAA ..((((((........))))))(((((...((((((((..(((((..........-....)))))...))))))))((((((((((........))))))))))))))).... ( -22.74, z-score = -1.23, R) >droSec1.super_4 3070665 88 + 6179234 ----------------UUAGUUUACAUUCCAUAGGUGUCUGGUUCGUGUUCUAUG-GGCAAGAACUCUUUAUCUAUAUUUGUGUGUAUGUAUGCAUGUACACAAG-------- ----------------..............(((((((...(((((.((((.....-)))).)))))...)))))))..(((((((((((....))))))))))).-------- ( -24.40, z-score = -2.71, R) >droSim1.chrX 2630011 88 - 17042790 ----------------UUAGUUUACAUUCCUUAGGUGUCUGGUUCGUGUUCUAUG-UGAAAGAACUCUUUAUCUAUAUUUGUGUGUAUGUAUGCAUGUACACAAG-------- ----------------...............((((((...(((((...(((....-.))).)))))...))))))...(((((((((((....))))))))))).-------- ( -21.50, z-score = -2.39, R) >droWil1.scaffold_180697 3477956 104 - 4168966 UGACUCUUGACUGCGAUUGGUAUAUGAGAGCGUGGUUCAUAUACUCGUUUCUAUGUUUAUUUAAUUCUUUAUCAAGAGCUGUGUGUAUGCCUUUUUUU-UAUAAG-------- ...(((((((....((((((.(((((..((((.(((......)))))))..)))))....)))))).....)))))))....................-......-------- ( -17.70, z-score = 0.18, R) >consensus U_A_U_U__A___C_AUUAGUUUACAUUCCAUAGGUGUCUGGUUCGUGUUCUAUG_UGAAAUAACUCUUUAUCUAUAUUUGUGUGUAUGUAUGCAUGUACACAAG________ ..............................(((((((...((((..(((........)))..))))...)))))))..(((((((((((....)))))))))))......... ( -7.16 = -8.00 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:56 2011