| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,585,806 – 3,585,912 |
| Length | 106 |
| Max. P | 0.639680 |
| Location | 3,585,806 – 3,585,912 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 122 |
| Reading direction | reverse |
| Mean pairwise identity | 72.54 |
| Shannon entropy | 0.47580 |
| G+C content | 0.45097 |
| Mean single sequence MFE | -30.31 |
| Consensus MFE | -13.50 |
| Energy contribution | -14.50 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639680 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3585806 106 - 22422827 GCAUUUUAGCCUUUGCAGCUGCUCUCUCUUCCAAACUCCCCAUCAA--UGUGUCACUCUAC------CUCUGAAGAGAGAAACGCAAGGAAAAUG--CUAUAAUUGGAGAGAGCUU------ (((..........)))....(((((((((.............((..--(((((..((((..------........))))..)))))..)).....--........)))))))))..------ ( -26.37, z-score = -1.01, R) >droEre2.scaffold_4690 981952 122 - 18748788 GCAUUUUAGCCUUUGCAGCUGCUCUCUCUUCCGAACUCCCCAUCAAUCUAAAUCUCUCUCCCUAUUUCUCUGAAGAGAGAAAAGGGAGAAAAGAAGUCUAAAUUUGGAACUGGAGAGGGCUU (((..........)))....(((((((((((((((.....................(((((((.(((((((....))))))))))))))..((....))...))))))...))))))))).. ( -40.00, z-score = -2.02, R) >droYak2.chrX 16951423 110 + 21770863 GCAUUUUUGACUUUGCAGCUGCUCUCUCUUCCGAACUCCCUAUCAACCUCUCCCUCUCUCU------CUCUGAAGAGAGAAAAGCAAAAAAAAUAGUCUAUAAUUGGAGAGAGCUU------ (((..........)))....(((((((((..........((((...........(((((((------......)))))))............)))).........)))))))))..------ ( -25.81, z-score = -1.33, R) >droSec1.super_4 3067948 83 + 6179234 GCAUUUUAGCCUUUGCAGCUGCUCUCUCUUCCGAACUCCCCAUCAAUGUG--UCUCUCUCC------CUCUGAAGAGAGAGGAGAGAGCUU------------------------------- (((..........)))....((((((((....((........))......--.(((((((.------.......)))))))))))))))..------------------------------- ( -25.90, z-score = -1.22, R) >droSim1.chrX 2627295 106 - 17042790 GCAUUUUAGCCUUUGCAGCUGCUCUCUCUUCCGAACUCCCCAUCAA--UGUGUCUCUCUCC------CUCUGAAGAGAGAAACGCAUAGAAAAUG--CUAUAAUUGGAGAGAGCUU------ (((..........)))....(((((((((.............((.(--(((((.((((((.------.......)))))).)))))).)).....--........)))))))))..------ ( -33.47, z-score = -3.24, R) >consensus GCAUUUUAGCCUUUGCAGCUGCUCUCUCUUCCGAACUCCCCAUCAA__UGUGUCUCUCUCC______CUCUGAAGAGAGAAAAGCAAGAAAAAUA__CUAUAAUUGGAGAGAGCUU______ (((..........))).(((..(((((((((.((..................................)).)))))))))..)))..................................... (-13.50 = -14.50 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:55 2011