| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,572,399 – 3,572,518 |
| Length | 119 |
| Max. P | 0.800952 |
| Location | 3,572,399 – 3,572,518 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 123 |
| Reading direction | forward |
| Mean pairwise identity | 67.47 |
| Shannon entropy | 0.64091 |
| G+C content | 0.39116 |
| Mean single sequence MFE | -23.18 |
| Consensus MFE | -9.32 |
| Energy contribution | -9.60 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.800952 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 3572399 119 + 22422827 --GAGAGACUGUGGUUUUGUGACUUUCGUAAAACGUUUGUUUUUGCUUCUGAUGGCAAAUGCAAGCUAUCGCCCCUCU-CUUUACCCCUUCUUU-GUUAUUUGCUAGCAUCCAAGUCAAUGUU --(((((...(((((((((((.....))))))))((((((.((((((......)))))).))))))...)))..))))-).......(((...(-((((.....)))))...)))........ ( -28.40, z-score = -2.19, R) >droSim1.chrX 2613707 119 + 17042790 ----GAGACUGUGGUUUUGUGACUUUCGUAAAACGUUUGUUUUUGCUUCUGAUGGCAAAUGCAAGCUAUCGCCUCUCUUCUAUACCCCUUCUUUUGUUAUUUGCCAGCAUCCAAGUCAAUGUU ----((((..(((((((((((.....))))))))((((((.((((((......)))))).))))))...))).))))............................(((((........))))) ( -23.90, z-score = -0.95, R) >droSec1.super_4 3054679 121 - 6179234 --GAGACUCUGUGGUUUUGUGACUUUCGUAAAACGUUUGUUUUUGCUUCUGAUGGCAAAUGCAAUCUAUCGCCUCUCUUCUAUACCCCUUCUUUUGUUAUUUGCCAGCAUCCAAGUCAAUGUU --..((((...(((...(((.......((((((.......))))))......((((((((((((.............................))).)))))))))))).)))))))...... ( -20.85, z-score = -0.52, R) >droYak2.chrX 16937259 113 - 21770863 ----GAGACUUUGCUUUUCUGACUUUCGUAAAACGUUUGUUUUUGCUUCUGAUAGCAGAAGC------CCCCCUUUUCUACCCAUUCUUUUUAUAUGUAUUUGGUAGCAUUCGAGUCAAUGUU ----..(((((((((...(..(....((((((((....))))..(((((((....)))))))------.........................))))...)..).))))...)))))...... ( -21.10, z-score = -1.47, R) >droEre2.scaffold_4690 968196 102 + 18748788 ------------GCAUUUGUGACUUUCGUAAAACGAUUGUUUUUGCUUCUGAUGGCAAAUGCAAGCUAUCGCCCCCCUUCU-CACCCCUUCUUUUGAUC--------CAUUCAAGUCAAUGUU ------------(((.....(((..(((.....)))..)))..)))....((((((........))))))...........-..........(((((..--------...)))))........ ( -16.90, z-score = -0.93, R) >droAna3.scaffold_13248 3942793 117 + 4840945 GAAGAACCCUACGAGAUGCAGAGAGAAAUGAAAUGUUUUUUGUUGAUUUUGAUGGCAAAU-UAAUGUUUUAUGACUUUUUGAAAU---UUUUGUGGCCA--AACCCCCAUGUAUUUCAUGGCU ........((((((((..(((((((..((((((((((.((((((.........)))))).-.))))))))))..)))))))....---))))))))...--.....(((((.....))))).. ( -27.90, z-score = -2.67, R) >consensus ____GAGACUGUGGUUUUGUGACUUUCGUAAAACGUUUGUUUUUGCUUCUGAUGGCAAAUGCAAGCUAUCGCCUCUCUUCUAUACCCCUUCUUUUGUUAUUUGCCAGCAUCCAAGUCAAUGUU ...................((((((.((.....)).((((.((((((......)))))).))))................................................))))))..... ( -9.32 = -9.60 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:54 2011