| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,565,511 – 3,565,591 |
| Length | 80 |
| Max. P | 0.557439 |
| Location | 3,565,511 – 3,565,591 |
|---|---|
| Length | 80 |
| Sequences | 5 |
| Columns | 83 |
| Reading direction | forward |
| Mean pairwise identity | 87.93 |
| Shannon entropy | 0.20854 |
| G+C content | 0.41461 |
| Mean single sequence MFE | -19.88 |
| Consensus MFE | -15.62 |
| Energy contribution | -15.34 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557439 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3565511 80 + 22422827 CAAGUGUGACCUGAAUUCUUGCAUACCGGUGUUUUGGGGAUGAGCGAUAGCUGUGAUGA---AUAUCGCACUUUAUAAAUACC ...(((((.(..(....)..)))))).((((((((((((...(((....)))(((((..---..))))).))))).))))))) ( -17.90, z-score = -0.73, R) >droEre2.scaffold_4690 960305 80 + 18748788 CAAGUGUGACCUCAGUUUUGGCAUACCGGUGUUUUAGGGAUGAGCGAUAGUUGAGAUAU---AUAUCGCACUUCAAAAAUACU ...(((((.((........))))))).((((((((...((.(.((((((..........---.)))))).).)).)))))))) ( -19.90, z-score = -1.59, R) >droYak2.chrX 16929430 83 - 21770863 CAAGUGUGACCUUAAUUCUGGCAUACCGGUGUUUUAGGGAUGAGCGAUAGUUUACAUCUCAAAUAUCGCACUUCAAAAAUACU .((((((((((((((..((((....))))....)))))).(((((....)))))...........)))))))).......... ( -21.30, z-score = -2.48, R) >droSec1.super_4 3047784 80 - 6179234 CAAGUGUGACCUGAAUUCAUGCAUACCGGUGUUUUCGGGAUGAGCGAUAGCUGUGAUGA---AUAUCGCACUUUAAAAAUACC .((((((((((((((..(((........)))..))))))...(((....))).......---...)))))))).......... ( -21.80, z-score = -2.19, R) >droSim1.chrX 2606027 80 + 17042790 CAAGUGUGACCUGAAUUCUUGCAUACCGGUGUUUUGGGGAUGAGCGAUAGCUGUGAUGA---AUAUCGCGCUUUAAAAAUACC ...(((((.(..(....)..)))))).((((((((((((....((((((..........---.)))))).)))).)))))))) ( -18.50, z-score = -0.92, R) >consensus CAAGUGUGACCUGAAUUCUUGCAUACCGGUGUUUUAGGGAUGAGCGAUAGCUGUGAUGA___AUAUCGCACUUUAAAAAUACC ...(((((.(..........)))))).((((((((...((.(.((((((..............)))))).).)).)))))))) (-15.62 = -15.34 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:53 2011