| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,544,522 – 3,544,573 |
| Length | 51 |
| Max. P | 0.990694 |
| Location | 3,544,522 – 3,544,573 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 90.85 |
| Shannon entropy | 0.12604 |
| G+C content | 0.46052 |
| Mean single sequence MFE | -14.20 |
| Consensus MFE | -14.15 |
| Energy contribution | -13.93 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.22 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.43 |
| SVM RNA-class probability | 0.990694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3544522 51 + 22422827 GAACAAAGGCAGCUGAACAGGUAUAAAAUACCAGAGCUUCGCUGUCUUCCC .....((((((((.((((.(((((...)))))...).)))))))))))... ( -13.80, z-score = -2.31, R) >droEre2.scaffold_4690 937355 51 + 18748788 GAACAAAGGCAGCAAAACAGGUAUAAAAUGCCAGAGCUUCGCUGUCUUGGU ..((.((((((((......(((((...))))).(.....))))))))).)) ( -14.90, z-score = -2.23, R) >droYak2.chrX 16907890 50 - 21770863 GAACAAAGGCAGCAAA-CAGGUAUAAAAUGCCAGAGCUUCGCUGUCUUCCU .....((((((((...-..(((((...))))).(.....)))))))))... ( -13.90, z-score = -2.13, R) >consensus GAACAAAGGCAGCAAAACAGGUAUAAAAUGCCAGAGCUUCGCUGUCUUCCU .....((((((((......(((((...))))).(.....)))))))))... (-14.15 = -13.93 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:51 2011