| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,533,859 – 3,533,963 |
| Length | 104 |
| Max. P | 0.981692 |
| Location | 3,533,859 – 3,533,963 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 90.29 |
| Shannon entropy | 0.15136 |
| G+C content | 0.55144 |
| Mean single sequence MFE | -34.00 |
| Consensus MFE | -28.69 |
| Energy contribution | -29.50 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.08 |
| SVM RNA-class probability | 0.981692 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3533859 104 - 22422827 UCAUGUGAGAGCAGGGGGCAAAAAUGGUGGAAAAGCGCUUGGAAAAGCGGACGGGCGGAAAAGCGGGUGGUC-------GAGUGGACGAGUCCAUUCAUAAUGGCAGCCAU ((.(((....))).))(((................(((((....)))))(((.(.(.(.....).).).)))-------(((((((....))))))).........))).. ( -31.40, z-score = -2.09, R) >droEre2.scaffold_4690 927076 104 - 18748788 UCAUGUGAGAGCAUGGGGCGAAAUCGUGGGAAAAGCGGUUGGAAAAGCGGACGGGCGGAAAAGCGGGUGGUC-------GAGUGGACGAGUCCAUUCAUAAUGGCAGCCAU ((((((....))))))(((..((((((.......))))))......((.(((.(.(.(.....).).).)))-------(((((((....)))))))......)).))).. ( -35.00, z-score = -3.18, R) >droSec1.super_4 3017141 111 + 6179234 UCAUGUGAGAGCAUGGGGCAAAAUGGUGGGAAAAGCGCUUGGAAAAGCGGACGGGCGGAAAAGCGGGUGGUCGGUGGUUGAGUGGACGAGUCCAUUCAUAAUGGCAGCCAU ((((((....))))))(((................(((((....)))))(((.(.(.(.....).).).))).((.((((((((((....))))))))..)).)).))).. ( -38.00, z-score = -3.49, R) >droSim1.chrX 2574955 109 - 17042790 UCAUGUGAGAGCAUGGGGCAAAAUGGUGGGAAA--UGGUGGGAAAAGCGGACGGGCGGAAAAGCGGGUGGUCGGUGGUUGAGUGGACGAGUCCAUUCAUAAUGGCAGCCAU ((((((....))))))(((..............--...........((.(((.(.(.(.....).).).))).))...((((((((....))))))))........))).. ( -31.60, z-score = -2.27, R) >consensus UCAUGUGAGAGCAUGGGGCAAAAUGGUGGGAAAAGCGCUUGGAAAAGCGGACGGGCGGAAAAGCGGGUGGUC_______GAGUGGACGAGUCCAUUCAUAAUGGCAGCCAU ((((((....))))))(((................(((((....)))))(((.(.(.(.....).).).))).......(((((((....))))))).........))).. (-28.69 = -29.50 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:49 2011