| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,503,238 – 3,503,320 |
| Length | 82 |
| Max. P | 0.528685 |
| Location | 3,503,238 – 3,503,320 |
|---|---|
| Length | 82 |
| Sequences | 3 |
| Columns | 82 |
| Reading direction | forward |
| Mean pairwise identity | 52.44 |
| Shannon entropy | 0.68803 |
| G+C content | 0.40650 |
| Mean single sequence MFE | -18.93 |
| Consensus MFE | -5.24 |
| Energy contribution | -2.70 |
| Covariance contribution | -2.54 |
| Combinations/Pair | 2.00 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.528685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3503238 82 + 22422827 UGUCAGAAAUGGCAACUAAAUAAGAGAAUAUGCAAAGGAAGUUGGCCCUGGAAUUCAGCGAAUGAUAAUGCAUGUGAGAUUC (((((....))))).............(((((((.(((........))).....(((.....)))...)))))))....... ( -15.70, z-score = -0.68, R) >droEre2.scaffold_4784 22785505 82 + 25762168 UGACAUAAAUAGAAAGCUUAUAACAUCAUAUGUGAAGGCAACUGGCCUUAGAGUAGCGUGAGUAAAUACACUUGCGAAAUUA ...............((((...((((...)))).(((((.....))))).))))..((..(((......)))..))...... ( -14.90, z-score = -0.63, R) >droGri2.scaffold_4401 6393 82 + 8607 UGCCGUUGGGAAAACGAGGAAACAAGAGUCUGCCAAGGAAACUGGGCAUGGAAAGAUGCAGAAGAGAACUUCUGUGAGACAA ...((((.....)))).(....)....(((((((.((....)).)))..........(((((((....))))))).)))).. ( -26.20, z-score = -3.71, R) >consensus UGACAUAAAUAGAAAGAAAAUAAAAGAAUAUGCAAAGGAAACUGGCCAUGGAAUAAAGCGAAUGAAAACACAUGUGAGAUUA .....(((...........................((....))..............((((((......))))))....))) ( -5.24 = -2.70 + -2.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:47 2011