| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,482,425 – 3,482,507 |
| Length | 82 |
| Max. P | 0.976339 |
| Location | 3,482,425 – 3,482,507 |
|---|---|
| Length | 82 |
| Sequences | 5 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 92.93 |
| Shannon entropy | 0.12629 |
| G+C content | 0.37360 |
| Mean single sequence MFE | -19.78 |
| Consensus MFE | -17.36 |
| Energy contribution | -18.60 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.95 |
| SVM RNA-class probability | 0.976339 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3482425 82 - 22422827 CCAACAUCUGAUUUUGCACUUUUUACGGUCACUAUUGUCUGCGUAAUUAUGGAAAUUGAUUUUCCAUCCUUUCGGGUCUUGA .(((.((((((...........(((((...((....))...)))))..(((((((.....)))))))....)))))).))). ( -16.20, z-score = -1.41, R) >droSim1.chrX 2550910 82 - 17042790 CCAACAUCUGAUUUUGCACUUUUUACGGUCACUAUUGUGAGCGUAAUUAUGGAAAUUGAUUUUCCAUCCUUUCGGGUCUUGA .(((.((((((...........(((((.((((....)))).)))))..(((((((.....)))))))....)))))).))). ( -24.40, z-score = -4.03, R) >droSec1.super_4 2987762 82 + 6179234 CCAACAUCUGAUUUUGCACUUUUUACGGUCACUAUUGUGAGCGUAAUUAUGGAAAUUGAUUUUCCAUUCUUUCGGGUCUUGA .(((.((((((...........(((((.((((....)))).)))))..(((((((.....)))))))....)))))).))). ( -24.40, z-score = -4.26, R) >droYak2.chrX 16866319 82 + 21770863 CCAACAUCUGAUUUUGCACUUUUUACGGUCACUAUUGUGUACGUAAUUAUGGAAAUUGAUUUUGCAUCCUUUCAGGUUUCGA .....((((((...((((....(((((..(((....)))..)))))..((....))......)))).....))))))..... ( -15.00, z-score = -0.95, R) >droEre2.scaffold_4690 897179 79 - 18748788 CCAACAUCUGAUUUUGCACUUUUUACGGUCACUAUAGUGAGCGUAAUUAUGGUAAUUGAUUUUCCAGCC-UUCGGGUCUU-- .....(((.....((((.....(((((.((((....)))).))))).....))))..)))......(((-....)))...-- ( -18.90, z-score = -2.07, R) >consensus CCAACAUCUGAUUUUGCACUUUUUACGGUCACUAUUGUGAGCGUAAUUAUGGAAAUUGAUUUUCCAUCCUUUCGGGUCUUGA .(((.((((((...........(((((.((((....)))).)))))...((((((.....)))))).....)))))).))). (-17.36 = -18.60 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:44 2011