| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,470,695 – 3,470,811 |
| Length | 116 |
| Max. P | 0.509114 |
| Location | 3,470,695 – 3,470,811 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 122 |
| Reading direction | forward |
| Mean pairwise identity | 62.36 |
| Shannon entropy | 0.69700 |
| G+C content | 0.52926 |
| Mean single sequence MFE | -21.29 |
| Consensus MFE | -9.97 |
| Energy contribution | -10.22 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.52 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509114 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3470695 116 + 22422827 CUUUUUUGCCCACCCCCCCCCCU------CCAGAGCCCCUUAUGCUACGCCCCCGCUGCACCUAAAAGCGUAUAUAAACCCGAAGAGCCCGACGCCGGGUUCAUAAAGUCGUACUCAUAUCU .......................------...(((..(.(((((.(((((.................)))))))))).......(((((((....)))))))........)..)))...... ( -20.73, z-score = -1.33, R) >droSim1.chrX 2539171 103 + 17042790 CUUUUUUGCCCCUCCUCGAGAGCC---CCUCAUGCC-----ACGC-----------UACUCCAGAAAGCGCAUAUAAACCCGAAGAGCCCGACGCCGGGUUCAUAAAGUCGGACUCAUAUCU ......(((.(...((.((((((.---.........-----..))-----------).))).))...).))).......((((.(((((((....)))))))......)))).......... ( -22.70, z-score = -0.66, R) >droSec1.super_4 2975977 103 - 6179234 CUUUUUUGCCCCUCCUCGAGAGCC---CCUCAUGCC-----ACGC-----------UACUCCAGAAAGCGCAUAUAAACCCGAAGAGCCCGACGCCGGGUUCAUAAAGUCGGACUCAUAUCU ......(((.(...((.((((((.---.........-----..))-----------).))).))...).))).......((((.(((((((....)))))))......)))).......... ( -22.70, z-score = -0.66, R) >droYak2.chrX 16853326 121 - 21770863 CUUCUUUGCCCCCUCUCCCCCCUAGAACCCCACCACACCAAAUGC-GUGGCCCCUCUACUCUAAAAAGCGAAUAUAAACCCGAAGAGCCCGGCGACGGGUUCAUAAAGUCGGACUCAUAUCU ....(((((.............((((...((((((.......)).-))))....)))).........))))).......((((.(((((((....)))))))......)))).......... ( -24.95, z-score = -1.04, R) >droEre2.scaffold_4690 883204 121 + 18748788 CUUUUUAGCCCCUUCUCUGGAGCCAACCCCUCUGCCCCCAAAUGC-GUAGCCCCCAUACUCUAAAGAGCGUAUAUAAACCGAAAGAGCCCGUCGCCGGGUUCAUAAAGUCCGACUCAUAUCU .......((....(((.(((((.......((.(((........))-).))........))))).)))))...............(((((((....))))))).................... ( -20.36, z-score = 0.19, R) >droAna3.scaffold_13248 3809798 100 + 4840945 --GUUAGAUCCACAUUCUCCCCUU-----UUGUUUC---GGACAC------------AAAAUCAGCUUCAUAUUUCCGGGCGCCGGUCGCCAGGACUUUCUCAUCAACUCGGAUUCAUAUCU --....(((((...........((-----((((...---....))------------)))).............(((.((((.....)))).)))...............)))))....... ( -16.30, z-score = 0.37, R) >consensus CUUUUUUGCCCCCCCUCCCCACCC___CCCCAUGCC_____ACGC___________UACUCCAAAAAGCGUAUAUAAACCCGAAGAGCCCGACGCCGGGUUCAUAAAGUCGGACUCAUAUCU ....................................................................................(((((((....))))))).................... ( -9.97 = -10.22 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:43 2011