| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,440,727 – 3,440,818 |
| Length | 91 |
| Max. P | 0.850439 |
| Location | 3,440,727 – 3,440,818 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 71.39 |
| Shannon entropy | 0.44452 |
| G+C content | 0.32226 |
| Mean single sequence MFE | -20.91 |
| Consensus MFE | -10.53 |
| Energy contribution | -11.21 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850439 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3440727 91 - 22422827 UAUCCUUAACUCUUGUGCAUGCCUAUUUAUGUGAAAACAAUCAAAA------------UUACUCAAUUAUGUAUGCAC-------------AGGUAUUGAAAGCUCCCACUAUUUA .....((((..(((((((((((.((.((..((((............------------))))..)).)).))))))))-------------)))..))))................ ( -18.70, z-score = -2.96, R) >droEre2.scaffold_4690 853268 112 - 18748788 UAUCCUUAAC--UUGUGCAUGCU--GCUUUGGGAAAGCAAAUAACGUAAAUGCAUUUUCUACUUAAACAUGUGUGCAUUUAAAGUAAUUGGAAGCACGUAAAGCUUUCACUUCUUA ........((--(((((((((((--(.((((((((((((...........))).)))))))...)).)).))))))))...))))...(((((((.......)))))))....... ( -22.40, z-score = -0.37, R) >droSec1.super_4 2946818 103 + 6179234 UAUCCUUAACUCUUGUGCAUGCUUCGUUUUGGGAAAGCACAUAAUAUAAAUACAUUUGUUACUCAAAAAUGUAUGCAC-------------AGAUAUCGAAAGCUCUCACUAUUUA .............(((((((((....(((((((..((((.................)))).)))))))..))))))))-------------)((...(....)...))........ ( -19.83, z-score = -1.95, R) >droSim1.chrX 2510712 103 - 17042790 UAUCCUUAACUCUUGUGCAUGCUUAGUUUUGGGUAAGCACAUAAAAUAAAUACAUUUGUUACUCAAAAAUGUAUGCAC-------------AGAUAUCGAAAGCUCUCACUAUAUA .............(((((((((....((((((((((.((.................))))))))))))..))))))))-------------)((...(....)...))........ ( -22.73, z-score = -2.66, R) >consensus UAUCCUUAACUCUUGUGCAUGCUUAGUUUUGGGAAAGCAAAUAAAAUAAAUACAUUUGUUACUCAAAAAUGUAUGCAC_____________AGAUAUCGAAAGCUCUCACUAUUUA ..............((((((((....(((((((............................)))))))..))))))))...................................... (-10.53 = -11.21 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:40 2011