| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,402,967 – 3,403,029 |
| Length | 62 |
| Max. P | 0.940184 |
| Location | 3,402,967 – 3,403,029 |
|---|---|
| Length | 62 |
| Sequences | 6 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 92.80 |
| Shannon entropy | 0.13578 |
| G+C content | 0.37097 |
| Mean single sequence MFE | -13.90 |
| Consensus MFE | -11.52 |
| Energy contribution | -11.60 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.940184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3402967 62 + 22422827 UUUCAUUAUUAAAUCAAAAAUGUUGAGUAAAUUUCAGCCAGCGGCUGACAGACUCCGCACUU ....................(((.((((...(.((((((...)))))).).)))).)))... ( -14.50, z-score = -2.72, R) >droSim1.chrX 2472084 62 + 17042790 UUUCGUUAUUAAAUCAAAAAUGUUGAGUAAAUUUCAGCCAGCGGCUGAGAGACUCCGCACUU ....................(((.((((...((((((((...)))))))).)))).)))... ( -18.10, z-score = -3.43, R) >droSec1.super_4 2909024 62 - 6179234 UUUCGUUAUUAAAUCAAAAAUGUUGAGUAAAUUUCAGCCAGCGGCUGACAGACUCCGCACUU ....................(((.((((...(.((((((...)))))).).)))).)))... ( -14.50, z-score = -2.32, R) >droYak2.chrX 16786443 62 - 21770863 UUUCAUUAUUAAAUCAAAAAAGUUGAGUAAAUUUCAGUCAGCGGCUGACAGACUCCGCACUU .....................((.((((...(.(((((.....))))).).)))).)).... ( -11.60, z-score = -1.84, R) >droEre2.scaffold_4690 808103 62 + 18748788 UUUCAUUAUUAAAUCAAAAAAGUUGAGUAAAUUUCAGCCAGCGGCUGACAGACUCCGCACUU .....................((.((((...(.((((((...)))))).).)))).)).... ( -14.00, z-score = -2.70, R) >droAna3.scaffold_13248 3659048 62 + 4840945 UUUCAUUAUUAAAUCAAAAAAGUUGAGUAAAUUUCAGCCAGCGGCUGACAGCUCUUCCAUCU ........................((((.....((((((...))))))..))))........ ( -10.70, z-score = -1.50, R) >consensus UUUCAUUAUUAAAUCAAAAAAGUUGAGUAAAUUUCAGCCAGCGGCUGACAGACUCCGCACUU .....................((.((((...(.((((((...)))))).).)))).)).... (-11.52 = -11.60 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:36 2011