| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,399,298 – 3,399,393 |
| Length | 95 |
| Max. P | 0.568560 |
| Location | 3,399,298 – 3,399,393 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 77.92 |
| Shannon entropy | 0.39777 |
| G+C content | 0.39895 |
| Mean single sequence MFE | -19.46 |
| Consensus MFE | -12.21 |
| Energy contribution | -11.79 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568560 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3399298 95 + 22422827 UCUGCUCUUGACUACUGGCUAAUUUGAUGAUUUCGUGAAAUACGAUAUUAUCAGGAAGCUGACAGAUCUUCGGCUUCUCCUUUUGCUUGAGAAUU .....(((..((....((......(((((((.(((((...))))).)))))))(((((((((.......)))))))))))....).)..)))... ( -25.30, z-score = -2.59, R) >droPer1.super_22 1425931 79 + 1688296 UCUGCCGUUGA---CUGGUUAAUUUGAUGAUUUUGUGAAAUAAGAUAUAAUCAGGAGACUGG-AAAUCUUUGCUCCCUCUCUC------------ ...((((....---.)))).....((((.(((((((...)))))))...))))((((...((-....))...)))).......------------ ( -12.50, z-score = 0.44, R) >dp4.chrXL_group1e 3685901 79 - 12523060 UCUGCCGUUGA---CUGGUUAAUUUGAUGAUUUUGUGAAAUAAGAUAUAAUCAGGAGACUGG-AAAUCUGUGCUCCCUUUCUC------------ ....(((((..---(((((((((((....((((....)))).)))).)))))))..))).))-....................------------ ( -12.30, z-score = 0.44, R) >droEre2.scaffold_4690 803392 87 + 18748788 UCUGCUCUUGACUACUGGCUAAUUUGAUGAUUUCGUGAAAUACGAUAUUAUCAGGAAGCUGGCAGAUCGUCGGCUCCU--------UUGAGCAUU ..(((((.................(((((((.(((((...))))).)))))))(((.((((((.....))))))))).--------..))))).. ( -28.80, z-score = -3.27, R) >droYak2.chrX 16779931 87 - 21770863 UCUGCUCUUGACUACUGGCUAAUUUGAUGAUUUCGUGAAAUACGAUAUUAUCAGGAAGCUGGCAGAUCCUCGGCUCCU--------UUGAGCAUU ((((((..........((((..(((((((((.(((((...))))).))))))))).))))))))))......((((..--------..))))... ( -25.20, z-score = -2.23, R) >droSec1.super_4 2905198 87 - 6179234 UCUGCUCCUGACUACUGGCUAAUUUGAUGAUUUCGUGAAAUACGAUAUUAUCAGGAAGCUGACAGAUCCUCGGCUCCU--------UUGAGAAUU ....(((.................(((((((.(((((...))))).)))))))(((.(((((.......)))))))).--------..))).... ( -20.80, z-score = -1.50, R) >droSim1.chrX 2468094 87 + 17042790 UCUGCUCCUGACUACUGGCUAAUUUGAUGAUUUCGUGAAAUACGAUAUUAUCAUGAAACUGACUGAUCCUCUGCUCCU--------UUGAGAAUU ......((........))......(((((((.(((((...))))).)))))))...............(((.......--------..))).... ( -11.30, z-score = -0.73, R) >consensus UCUGCUCUUGACUACUGGCUAAUUUGAUGAUUUCGUGAAAUACGAUAUUAUCAGGAAGCUGGCAGAUCCUCGGCUCCU________UUGAGAAUU ...(((..........))).....(((((((.(((((...))))).)))))))((.((((((.......)))))))).................. (-12.21 = -11.79 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:35 2011