| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,398,451 – 3,398,549 |
| Length | 98 |
| Max. P | 0.601611 |
| Location | 3,398,451 – 3,398,549 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 78.02 |
| Shannon entropy | 0.40116 |
| G+C content | 0.56909 |
| Mean single sequence MFE | -35.30 |
| Consensus MFE | -23.57 |
| Energy contribution | -25.65 |
| Covariance contribution | 2.08 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.601611 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3398451 98 + 22422827 --AGCGGCAU-GGAACCGGAAAUCGGAUA-------GAGGCGGAAACUGCUGCUGGCCAAGCAGUGCGGCCAUAAGGCGGCCGAAUGGGUGCACUGCUUUGUUAAUGU --.((((((.-....(((.....)))...-------.....(....)))))))((((.((((((((((.((((..((...))..)))).)))))))))).)))).... ( -40.70, z-score = -2.38, R) >droAna3.scaffold_13248 3651952 89 + 4840945 ACAGGACCAAAGGAAACGGAAAUCGGCGA---AGAGGAGGGGCGGUCCACUG---GCCAAGCAGUUCGCUGAUAUAUAAGGCGAAUGCUGGCGCU------------- ...(((((...(....)........((..---.........)))))))....---((((.(((.((((((.........)))))))))))))...------------- ( -29.50, z-score = -1.66, R) >droEre2.scaffold_4690 802571 102 + 18748788 --AGCGGCAU-GGAACCGGAAAUCGGAAAUCGGAAGGAGGCGGAAACUGCUG---GCCAAGCAGUGCGGCCAUAAGGCGGCCGAAUGUGUGCACUGCUUUGUUAAUGU --((((((..-....(((.....)))...((....)).((((....).))).---)))(((((((((((((.......))))........))))))))).)))..... ( -33.90, z-score = -0.24, R) >droYak2.chrX 16779079 104 - 21770863 AGCGGGGCGU-GGAACCGGAAAUCGGAAAUCGGAAGGAGGCGGAAACUGCUG---GCCAAGCAGUGCGGCCAUAAGGCGGCCGCAUGGGUGCACUGCUUUGUUAAUGU ((((((((((-(..(((.....((.(...((....))...).)).((((((.---....))))))((((((.......))))))...))).))).))))))))..... ( -39.90, z-score = -1.18, R) >droSec1.super_4 2904418 95 - 6179234 --AGCGGCAU-GGAACCGGAAAUCGGAUA-------GAGGCGGAAACUGCUG---GCCAAGCAGUGCGGCCAUAAGGCGGCCGAAUGGGUGCACUGCUUUGUUAAUGU --((((((..-....(((.....)))...-------..((((....).))).---)))((((((((((.((((..((...))..)))).)))))))))).)))..... ( -37.20, z-score = -1.92, R) >droSim1.chrX 2467266 95 + 17042790 --AGCGGCAU-GGAACCGGAAAUCGGAUA-------GAGGCGGAAACUGCUG---GCCAAGCAGUGCGGCCAUAAGGCGGCCGAAUGGGUGCACUUCUUUGUUAAUGU --((((((..-....(((.....)))...-------..((((....).))).---)))(((.((((((.((((..((...))..)))).)))))).))).)))..... ( -30.60, z-score = -0.00, R) >consensus __AGCGGCAU_GGAACCGGAAAUCGGAUA_______GAGGCGGAAACUGCUG___GCCAAGCAGUGCGGCCAUAAGGCGGCCGAAUGGGUGCACUGCUUUGUUAAUGU .....(((.......(((.....)))............((((....).)))....)))((((((((((.((((..((...))..)))).))))))))))......... (-23.57 = -25.65 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:34 2011