| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,383,225 – 3,383,319 |
| Length | 94 |
| Max. P | 0.537252 |
| Location | 3,383,225 – 3,383,319 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 75.60 |
| Shannon entropy | 0.47361 |
| G+C content | 0.29347 |
| Mean single sequence MFE | -16.65 |
| Consensus MFE | -6.35 |
| Energy contribution | -7.21 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.537252 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3383225 94 - 22422827 -CUUUCUAUACAAGUAAAUGUAAUUUAAUCGUAAUUUGAGUAUAAUUUCACUUAACUAA------UUUUAGUCAAAUUGGUAGCGUUUGCUCGUCGUUUCG--- -........((.(((((((((...............(((((........)))))(((((------(((.....)))))))).))))))))).)).......--- ( -15.40, z-score = -1.61, R) >droSim1.chrX 2461305 94 - 17042790 -CUUUCUGUACAAGUAAAUGUAAUUUAAUCGUAAUUUGAGUAUAAUUUCACUUAACUAA------UUUUAGUCAAAUUGGUAGCGUUUGCUUGUCGUUUCG--- -......(.((((((((((((...............(((((........)))))(((((------(((.....)))))))).)))))))))))))......--- ( -20.00, z-score = -3.29, R) >droSec1.super_4 2898463 94 + 6179234 -CUUUCUGUACAAGUAAAUGUAAUUUAAUCGUAAUUUGAGUAUAAUUUCACUUAACUAA------UUUUAGUCAAAUUGGUAGCGUUUGCUUGUCGUUUCG--- -......(.((((((((((((...............(((((........)))))(((((------(((.....)))))))).)))))))))))))......--- ( -20.00, z-score = -3.29, R) >droYak2.chrX 16773003 94 + 21770863 -CUUUCUAUACAAGUAAAUGUAAUUUAAUUGUAAUUUGAGUAUAAUUUCACUUAACUAA------UUUUAGUCAAAUUAGUAGCGUUUGCUCGUCGUUUCG--- -........((.(((((((((...............(((((........)))))(((((------(((.....)))))))).))))))))).)).......--- ( -15.70, z-score = -1.91, R) >droEre2.scaffold_4690 796634 94 - 18748788 -CUUUCUAUACAAGUAAAUGUAAUUUAACCGUAAUUUGAGUAUAAUUUCACUUAACUAA------UUUUAGUCAAAUUGGUAGCGUUUGCUCGUCGUUUCG--- -........((.(((((((((......((((..((((((.((.((((..........))------)).)).)))))))))).))))))))).)).......--- ( -15.40, z-score = -1.40, R) >droAna3.scaffold_13248 3641113 102 - 4840945 -CCUUCUAUACAA-UAAAUGUAAUUUAAUUGUAAUUUGAGUAAAAUUUCACUUAACUAAUUUCAUUUUUAGUCAAAUUGGUUGCGUUUCCUCGCUUCUCCUCCU -.......(((((-(.((......)).))))))((((((.(((((....................))))).)))))).((..(((......)))....)).... ( -13.45, z-score = -2.43, R) >triCas2.ChLG8 14571086 90 + 15773733 ACUUUAAAAUUAAGUAAGCAACACUGAAUAGU-GUGGAAACAGAAGAUAUUGGUGUUAAAC---GUGCCAAUUAAUACAGUCGCUGUGCAUUAC---------- .............((((((...((((.((..(-.((....)).)..))(((((..(.....---)..))))).....)))).))).))).....---------- ( -16.60, z-score = -0.15, R) >consensus _CUUUCUAUACAAGUAAAUGUAAUUUAAUCGUAAUUUGAGUAUAAUUUCACUUAACUAA______UUUUAGUCAAAUUGGUAGCGUUUGCUCGUCGUUUCG___ .........((.(((((((((.(((...........(((((........)))))(((((........)))))......))).))))))))).)).......... ( -6.35 = -7.21 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:33 2011