| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,864,347 – 9,864,416 |
| Length | 69 |
| Max. P | 0.858084 |
| Location | 9,864,347 – 9,864,416 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 67.72 |
| Shannon entropy | 0.64335 |
| G+C content | 0.46406 |
| Mean single sequence MFE | -13.92 |
| Consensus MFE | -6.53 |
| Energy contribution | -6.45 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.858084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9864347 69 - 23011544 GAAUAUGCAUUUUUUCAA-------------ACAUCCUUCAGCGGAAGCUUAAGCCCCAAAAUGCACCGCUGCGUGCGCCUC .....((((((((.....-------------.....(((.(((....))).)))....)))))))).(((.....))).... ( -14.44, z-score = -0.72, R) >droSim1.chr2L 9648767 82 - 22036055 GAAUAUGCAUUUUUCCAAAUACCGAGUCAACACAUCCUUCAGCGGAAGCUUAAGCCCCAAAAUGCACCCCUGCGUACGCCUC .....((((((((............((....))...(((.(((....))).)))....)))))))).....((....))... ( -13.30, z-score = -1.31, R) >droSec1.super_3 5310395 82 - 7220098 GAAUAUGCAUUUUUCCAAAUACCGAGUCAACACAUGCUUCAGCGGAAGCUUAAGCCCCAAAAUGCACCCCUGCGUACGCCUC .....((((((((............((....))..((((.(((....))).))))...)))))))).....((....))... ( -16.80, z-score = -1.91, R) >droYak2.chr2L 12553468 82 - 22324452 GAAUAUGCAUUUUCCCAAACAUCGAGUCAACACAUCCUUGAGCGGAAGCUUAAGCCCCAAAAUGCUCCCCUGCCAGCGCCUC ......(((((((............((....))...(((((((....)))))))....)))))))................. ( -15.50, z-score = -1.34, R) >droEre2.scaffold_4929 10477969 82 - 26641161 GAAUAUGCAUUUUCCCAAACAUCGAGUCAACACAUCCUUGAGCGGAAGCUCGAGCCCCAAAAUGCUCCCCUGCUAGCGCCUC ......(((((((............((....))...(((((((....)))))))....)))))))................. ( -17.40, z-score = -1.50, R) >droAna3.scaffold_12943 1308052 68 - 5039921 GAGUAUGAGUUAUUUUUAACCUUCUUUUUUAGAAUUUUAUAAAUGCCCUUUUUUUCUCCAAGUGUCGA-------------- (((...(((.(((((.(((..((((.....))))..))).)))))..))).....)))..........-------------- ( -6.10, z-score = -0.29, R) >consensus GAAUAUGCAUUUUUCCAAACAUCGAGUCAACACAUCCUUCAGCGGAAGCUUAAGCCCCAAAAUGCACCCCUGCGUGCGCCUC ......(((((((............((....))...(((.(((....))).)))....)))))))................. ( -6.53 = -6.45 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:07 2011