| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,322,935 – 3,323,013 |
| Length | 78 |
| Max. P | 0.643414 |
| Location | 3,322,935 – 3,323,013 |
|---|---|
| Length | 78 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 59.13 |
| Shannon entropy | 0.70126 |
| G+C content | 0.43660 |
| Mean single sequence MFE | -16.56 |
| Consensus MFE | -8.28 |
| Energy contribution | -9.20 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.50 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.643414 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3322935 78 + 22422827 ---UUUUGCAACAACCAUUCCUCC--UUUACCACUGUAAUUUCGAGCAGGGAUUGCAUAAUUUGGGGUAGUUCCUGUCACCCU--------- ---....(((..(((.(((((...--.(((....((((((..(.....)..)))))))))...))))).)))..)))......--------- ( -13.80, z-score = 0.55, R) >droEre2.scaffold_4690 730461 60 + 18748788 ---------------------UUU--UAUACCACUGUAAUAUCGAGCAGGGAUUGUGUAACUCGGGGUGGUUCUUGUCACCCU--------- ---------------------...--....((.((((........))))))............(((((((......)))))))--------- ( -15.30, z-score = -0.66, R) >droYak2.chrX 16711593 78 - 21770863 ---UUCUAUUUCAACAGGCAUUCC--UUUACCACUGUAAUUUCGAGCAGGGAUUGUUUAACUUGGGGUGGUUCUUGGCACCCU--------- ---............(((((.(((--.......((((........))))))).))))).....((((((.(....).))))))--------- ( -16.61, z-score = 0.23, R) >droSec1.super_10 3021816 75 + 3036183 ------UUUUUCAACAACCAUUCC--UUUUCCACUGUAAUUUCGAGCAGGGAUUGCAUAACUUGGGGUGGUUCCUGGCACCCU--------- ------....(((..(((((((((--........((((((..(.....)..))))))......)))))))))..)))......--------- ( -20.24, z-score = -1.20, R) >droSim1.chrX 2402707 60 + 17042790 ---------------------UUU--UUCAACACUGUAAUUUCGAGCAGGGAUUGCAUAACUUGGGGUGGUUCCUGGCACCCU--------- ---------------------...--........((((((..(.....)..))))))......((((((.(....).))))))--------- ( -16.80, z-score = -1.07, R) >droGri2.scaffold_15203 7844730 90 - 11997470 UUUUGCAACAACAACCCCAAAUACAAUUUGAUGUUGCACAACUUAACUAGAAUUUUACAAUUGAAGGUA--UCUUGGCAGUGAGCUGCCCCU ...(((((((.(((.............))).)))))))...............................--....(((((....)))))... ( -16.62, z-score = -0.87, R) >consensus ______U____CAAC____A_UCC__UUUACCACUGUAAUUUCGAGCAGGGAUUGCAUAACUUGGGGUGGUUCCUGGCACCCU_________ ..................................(((((((((.....)))))))))......((((((........))))))......... ( -8.28 = -9.20 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:27 2011