| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,316,104 – 3,316,157 |
| Length | 53 |
| Max. P | 0.728268 |
| Location | 3,316,104 – 3,316,157 |
|---|---|
| Length | 53 |
| Sequences | 11 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 76.27 |
| Shannon entropy | 0.46973 |
| G+C content | 0.48948 |
| Mean single sequence MFE | -10.20 |
| Consensus MFE | -5.63 |
| Energy contribution | -5.34 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.728268 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3316104 53 - 22422827 -CCCCGGC--UACAAUUAGC----GACCUGGCACUUUUGCCAUCGUCUCGAUAUUUCCCA -...((((--((....))))----(((.(((((....)))))..))).)).......... ( -12.60, z-score = -2.54, R) >droEre2.scaffold_4690 723945 54 - 18748788 CCCGCGGC--UACAAUUAGC----GACCUGGCACUUUUGCCGUCCUCUCGACGUUUUCCA ..((((((--((....))))----(((..((((....)))))))....)).))....... ( -11.50, z-score = -0.74, R) >droYak2.chrX 16705135 53 + 21770863 -CCCCGGC--UACAAUUAGC----GACCUGGCACUUUUGCCGUCCUCUCGAUAUUUCCCA -...((((--((....))))----(((..((((....)))))))....)).......... ( -10.00, z-score = -1.35, R) >droSec1.super_10 3015396 53 - 3036183 -CCCCGGC--UACAAUUAGC----GACCUGGCACUUUUGCCAUCGUCUCGAUAUUUCCCA -...((((--((....))))----(((.(((((....)))))..))).)).......... ( -12.60, z-score = -2.54, R) >droSim1.chrX 2395760 53 - 17042790 -CCCCGGC--UACAAUUAGC----GACCUGGCACUUUUGCCAUCGUCUCGAUAUUUCCCA -...((((--((....))))----(((.(((((....)))))..))).)).......... ( -12.60, z-score = -2.54, R) >droPer1.super_13 2079621 52 - 2293547 --CACUAC--UACAAUUAGC----GACCUGGCACUUUUGCCAUCCACUCGAGAGUUCCAA --......--...((((..(----((..(((((....))))).....)))..)))).... ( -8.30, z-score = -1.29, R) >dp4.chrXL_group1a 7438891 52 - 9151740 --CACUAC--UACAAUUAGC----GACCUGGCACUUUUGCCAUCCACUCGAGAGUUCCAA --......--...((((..(----((..(((((....))))).....)))..)))).... ( -8.30, z-score = -1.29, R) >droWil1.scaffold_181096 1949109 54 + 12416693 --AAUGGCCAUGCAAUUAGC----GACCUGGCACUUUUGCCAUUGACUUGAUAGUUCCAA --..(((....((.((((((----((..(((((....)))))))).).)))).)).))). ( -9.80, z-score = 0.03, R) >droVir3.scaffold_12970 3779951 51 + 11907090 ---------CUGCAAUUAACAUGGAAGGUGGCAUUUUUGCUAUUGACUCGAUAUUUCCAG ---------............((((((((((((....))))))..........)))))). ( -9.50, z-score = -0.88, R) >droMoj3.scaffold_6482 1300787 50 - 2735782 ----------UGCAAUUAACAUGGAAGGUGGCAUUUUUGCUAUUGACUCGAUAUUUCCAA ----------...........((((((((((((....))))))..........)))))). ( -9.50, z-score = -0.97, R) >droAna3.scaffold_12613 482149 50 + 519072 --CGCAAC--UACAAUUAGC----GACCUGGCACUUUUGCCAUCCACCCGAUACUUCC-- --(((...--........))----)...(((((....)))))................-- ( -7.50, z-score = -2.01, R) >consensus __CCCGGC__UACAAUUAGC____GACCUGGCACUUUUGCCAUCGACUCGAUAUUUCCAA ............................(((((....))))).................. ( -5.63 = -5.34 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:25 2011