| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,289,671 – 3,289,779 |
| Length | 108 |
| Max. P | 0.588489 |
| Location | 3,289,671 – 3,289,779 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 75.89 |
| Shannon entropy | 0.44459 |
| G+C content | 0.44044 |
| Mean single sequence MFE | -31.56 |
| Consensus MFE | -15.35 |
| Energy contribution | -16.06 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588489 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3289671 108 - 22422827 UUUUUUGCUAUCUUGGUGGAAA-----AAUUUUUGGGCGUGUUGCUAGGCACUGGAAAUUAAGAUGAUUUAGCCACUGGGA----CCAUGGCGAAAUUUCUACGGGACUUUGGGUAA ..(((((((((((..((((...-----((((((..(((.((....)).)).)..))))))..((....))..))))..)))----...)))))))).(((....))).......... ( -27.10, z-score = -0.99, R) >droSim1.chrX 2375452 113 - 17042790 UUUUUUGCUCUCUUGGUGGAAAAAUUAAAUUUUUGUGCGUGUUGCUAGGCACUGGAAAUGAAGAUGAUUUAGCCACUGGGA----CCAUGGCGAAAUUUCUACGGGACUGUGGGUAA ..(((((((.(((..((((..((((((.((((((((((.((....)).)))).)))))).....))))))..))))..)))----....)))))))..((((((....))))))... ( -32.10, z-score = -2.15, R) >droSec1.super_10 2995480 113 - 3036183 UUUUUUGCUCUCUUGGUGGAAAAAUUAAAUUUUUGUGCGUGUUGCUAGGCACUGGAAAUGAAGAUGAUUUGGCCACUGGGA----CCAUGGCGAAAUUUCUACGGGACUGUGGGUAA ..(((((((.(((..((((..((((((.((((((((((.((....)).)))).)))))).....))))))..))))..)))----....)))))))..((((((....))))))... ( -33.10, z-score = -2.44, R) >droYak2.chrX 16683126 106 + 21770863 --UUUUGCUCGCUUGGUGGAAA-----AUUUUUUGGGCGUGUUGCUAGGCACUGGAAAUGAAGAAGAUUUAGCCACUGGGA----ACACGGCGAAAUUUCUACGGGACUGUGGGUAA --..((((((((((.(((((((-----....(((.(.((((((.((((....(((...((((.....)))).))))))).)----))))).).)))))))))).))...)))))))) ( -34.00, z-score = -2.87, R) >droEre2.scaffold_4690 701901 106 - 18748788 --UUUUGCUUUCUCGGUGGAAA-----AUUUUUUGGGCGUGUUGCUAGGCACUGGAAAUGCCGCAGAUUUGGCCACUGCGA----ACAUGGCGAAAUUUCUACGGUACUGUGGGUAA --((((((((((.((((((..(-----(...(((((((((....((((...))))..))))).)))).))..)))))).))----)...)))))))..((((((....))))))... ( -33.80, z-score = -1.80, R) >droAna3.scaffold_12613 451795 113 + 519072 --UUUUGGCGGCCGAUCGCAGAAGC--UCUUUGUUGCUUUGUUGCUAGGCGCUGGAAAAAAAAAAAAUAUAGUGAGUCGGAGAUGAUUUAGUGAGGAUGCUGGGAAUUAGUCGGCCA --.......(((((((..(...(((--((((..(((..(..(..((...(((((...............)))))....))..)..)..)))..)))).)))..).....))))))). ( -29.26, z-score = 0.18, R) >consensus __UUUUGCUCUCUUGGUGGAAA_____AAUUUUUGGGCGUGUUGCUAGGCACUGGAAAUGAAGAAGAUUUAGCCACUGGGA____ACAUGGCGAAAUUUCUACGGGACUGUGGGUAA ..(((((((.(((((((((.........(((((((...(((((....)))))......))))))).......)))))))))........)))))))...(((((....))))).... (-15.35 = -16.06 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:24 2011