| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,278,048 – 3,278,143 |
| Length | 95 |
| Max. P | 0.857270 |
| Location | 3,278,048 – 3,278,143 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 83.06 |
| Shannon entropy | 0.29025 |
| G+C content | 0.54705 |
| Mean single sequence MFE | -33.50 |
| Consensus MFE | -21.96 |
| Energy contribution | -23.68 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857270 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3278048 95 + 22422827 CGCACAUGGCGCACAAUUCCGCAUGGCAACAGAGAAAGCUGGA-GGCUUGUAGAAGAGGGACUGCCCGAUAUAUUGGAUUGGAUGGGAUGUGGGGG (.(((((..((..((((((.(((.(((..(((......)))..-.))))))......(((....)))........))))))..))..))))).).. ( -25.60, z-score = -0.38, R) >droSim1.chrX 2363969 89 + 17042790 CCCACAUCGCGCACAAUUCCGCCUGGCAACAGAGAAAGCUGGA-GGCUUGUAG-----GGAUUGCCCGAUAUAUCC-AUUGGAUGGGAUGUGGGGG ((((((((.((..(((((((..(((....)))...((((....-.))))...)-----)))))).(((((......-))))).)).)))))))).. ( -36.40, z-score = -2.44, R) >droSec1.super_10 2982962 89 + 3036183 CCCACAUCGCGCACAAUUCCGCCUGGCAACAGAGAAAGCUGGA-GGCUUGUAG-----GGAUUGCCCGAUAUAUCC-AUUGGAUGGGAUGUGGGGG ((((((((.((..(((((((..(((....)))...((((....-.))))...)-----)))))).(((((......-))))).)).)))))))).. ( -36.40, z-score = -2.44, R) >droYak2.chrX 16671501 85 - 21770863 CCCACAUCUCGCACAGUUCCGCCUGAGAACAGAUAAAGCUGGA-GGCUUGUAG-----GGAUAGCCCCAUAUA-----UUGGAUGGGGAGUGGGGG ((((((((((..((((....((((.....(((......))).)-))))))).)-----))))..((((((...-----....)))))).))))).. ( -30.90, z-score = -1.37, R) >droEre2.scaffold_4690 690359 88 + 18748788 CCCACAUCUCGCACAAUUUCGCCUGGCAACAGAGAAAGCUCUCCAGCUUGUAG-----GGAUAGCUUCAUAUAUUGGAU---GUGGGAUGUGGGGG (((((((((((((...((((..(((....))).))))....(((((..(((..-----((....))..)))..))))))---)))))))))))).. ( -38.20, z-score = -4.23, R) >consensus CCCACAUCGCGCACAAUUCCGCCUGGCAACAGAGAAAGCUGGA_GGCUUGUAG_____GGAUUGCCCGAUAUAUCC_AUUGGAUGGGAUGUGGGGG ((((((((.((((....(((..(((....)))...(((((....))))).........))).)))(((((.......)))))..).)))))))).. (-21.96 = -23.68 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:23 2011