| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,277,871 – 3,277,970 |
| Length | 99 |
| Max. P | 0.670365 |
| Location | 3,277,871 – 3,277,970 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 89.25 |
| Shannon entropy | 0.19456 |
| G+C content | 0.51201 |
| Mean single sequence MFE | -32.83 |
| Consensus MFE | -21.40 |
| Energy contribution | -21.65 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.670365 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3277871 99 - 22422827 GGCGGAGACAGACCAAUGACGUCAAC------ACGAAAGGGCGUCGUCGUCGUCUGUCUGUCGCGACGCCACUUGAAAUUGAAAUCCGUGCAAAUCUAUUGCUUC ((((..(((((((..((((((.(.((------.(....)...)).).))))))..)))))))....))))...................((((.....))))... ( -33.70, z-score = -1.77, R) >droSim1.chrX 2363809 93 - 17042790 GGCGGCGACAGACCAAUGACGUCAAC------ACGAAAGGGCGU------CGUCUGUCUGUCGCGACGCCACUUGAAAUUGAAAUCCGUGCAAAUCUAUUGCUUC (((((((((((((..((((((((...------.(....))))))------)))..)))))))))..))))...................((((.....))))... ( -37.70, z-score = -4.04, R) >droSec1.super_10 2982802 93 - 3036183 GGCGGAGACAGACCAAUGACGUCAAC------ACGAAAGGGCGU------CGUCCGUCUGUCGCGACGCCACUUGAAAUUGAAAUCCGUGCAAAUCUAUUGCUUC ((((..(((((((..((((((((...------.(....))))))------)))..)))))))....))))...................((((.....))))... ( -33.70, z-score = -2.78, R) >droYak2.chrX 16671325 93 + 21770863 GGCGGAGACAGACCAAUGACGUCAAC------ACGAAAGGGCGU------CGUCUGUCUGUCGCGACGCCACUUGAAGUUGAAAUCCGUGCAAAUCUAUUGCUUC .((((((((((((..((((((((...------.(....))))))------)))..))))))).((((..........))))...)))))((((.....))))... ( -34.90, z-score = -2.85, R) >droEre2.scaffold_4690 690177 93 - 18748788 GGCGGAGACAGACCAAUGACGUCAAC------ACGAAAGGGCGU------CGUCUGUCUGUCGCGACGACACUUGAAAUUGAAAUCCGUGCAAAUCUAUUGCUUC .((((((((((((..((((((((...------.(....))))))------)))..))))))).(((......))).........)))))((((.....))))... ( -31.80, z-score = -2.45, R) >droAna3.scaffold_12613 86593 102 - 519072 AGUGGAGACAAACCCAUGACGUCAACAGAAAAACAAAAGGGCGUCGGCGACGUC-GUC-GUUGU-UUGCCACUUGAAAUUGAAAUCCGUGCAAAUCUAUUGCUUC (((((((((((......((((((................))))))((((....)-)))-.))))-)).)))))................((((.....))))... ( -25.19, z-score = -0.26, R) >consensus GGCGGAGACAGACCAAUGACGUCAAC______ACGAAAGGGCGU______CGUCUGUCUGUCGCGACGCCACUUGAAAUUGAAAUCCGUGCAAAUCUAUUGCUUC ((((..(((((((....((((............(....)...........)))).)))))))....))))...................((((.....))))... (-21.40 = -21.65 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:22 2011