| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,850,281 – 9,850,386 |
| Length | 105 |
| Max. P | 0.825448 |
| Location | 9,850,281 – 9,850,386 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 86.03 |
| Shannon entropy | 0.24974 |
| G+C content | 0.45110 |
| Mean single sequence MFE | -36.15 |
| Consensus MFE | -24.77 |
| Energy contribution | -25.52 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.825448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9850281 105 - 23011544 AAGACAAACAGAAACAACAAUG------------AGCGGCAGCAGUGGGCUAUUUAGUUGCAAUUGUUGCUGCUCUCGUUGUUGCUCCCUUUUGUUGUUGUUUGGAUGUAGUAGCUG ...(((..((((((((((((.(------------((((((((((((..((.........)).)))))))))))))..((....))......)))))))).))))..)))........ ( -35.20, z-score = -2.09, R) >droSim1.chr2L 9634684 104 - 22036055 AAGACAAACAGAAACAACAAUG------------AGCGGCAGCAGUGGGCUAUUUAGUUGCAAUUGUUGCUGCUUUCGUUGUUGCUCCC-UUUGUUGUUGUUUGGAUGUAGUAGCUG ..((((((..((..((((((((------------((((((((((((..((.........)).)))))))))))..))))))))).))..-))))))..................... ( -33.10, z-score = -1.59, R) >droSec1.super_3 5296975 104 - 7220098 AAGACAAACAGAAACAACAAUG------------AGCGGCAGCAGUGGGCUAUUUAGUUGCAAUUGUUGCUGCUCUCGUUGUUGCUCCC-UUUGUUGUUGUUUGGAUGUAGUAGCUG ...(((..((((((((((((.(------------((((((((((((..((.........)).)))))))))))))..((....))....-.)))))))).))))..)))........ ( -35.20, z-score = -2.13, R) >droYak2.chr2L 12539266 104 - 22324452 AAGACAAACAGAAACAACAAUG------------AGCGGCAGCAGUGGGCUAUUUAGUUGCAAUUGUUGCUGCUCUCGUUGCUGCUCCC-UUUGUUGUUGCCUGGAUGUAGUAGCUG ...(((..(((.((((((((.(------------(((((((((.(.((((.....(((.((....)).))))))).)))))))))))..-.))))))))..)))..)))........ ( -39.20, z-score = -2.69, R) >droEre2.scaffold_4929 10462359 104 - 26641161 AAGACAAACAGAAACAACAAUA------------AGCGGCAGCAGCGGGCUAUUUAGUUGCAAUUGUUGCUGCUCUCGUUGUCGCUCCC-UUUGUUGUUGCUUGGAUGUAGUAGCUG ...(((..(((.((((((((..------------(((((((((.(.((((.....(((.((....)).))))))).))))))))))...-.))))))))..)))..)))........ ( -32.80, z-score = -1.08, R) >droAna3.scaffold_12943 1294400 102 - 5039921 AAGACAAACAGAAACAACAAUGAGCAGCGGCAGUAGCAGCGGCAGUGGGCUAUUUAGUUGCAAUUGUUGUUGCUCUCGUUGCUCCUUUU-GUUGUUGUAGCUG-------------- ........(((.((((((((.((((((((..((.((((((((((((..((.........)).))))))))))))))))))))))...))-))))))....)))-------------- ( -41.40, z-score = -3.52, R) >consensus AAGACAAACAGAAACAACAAUG____________AGCGGCAGCAGUGGGCUAUUUAGUUGCAAUUGUUGCUGCUCUCGUUGUUGCUCCC_UUUGUUGUUGCUUGGAUGUAGUAGCUG ..((((((......((((((((............((((((((((((..((.........)).))))))))))))..))))))))......))))))..................... (-24.77 = -25.52 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:06 2011