| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,274,196 – 3,274,294 |
| Length | 98 |
| Max. P | 0.890962 |
| Location | 3,274,196 – 3,274,294 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 69.41 |
| Shannon entropy | 0.58667 |
| G+C content | 0.42341 |
| Mean single sequence MFE | -23.58 |
| Consensus MFE | -11.49 |
| Energy contribution | -12.05 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.890962 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3274196 98 + 22422827 -AAGGAAGAAAAAGUGCAAGAAAUGCGCGUGGGAAAAUCUUACAGUGCAGCGGAAGCAAUGUUUUUCCGCAAUUGUUUAUAACA--CAGCGGUGGCUAAUG--- -..(((((((.............((((((((((.....))))).)))))((....))....)))))))((.((((((.......--.)))))).)).....--- ( -27.70, z-score = -1.84, R) >droSim1.chrX 2360259 96 + 17042790 -AAGGAGGAAAAAGUGCAAGAAAUGCGCGUGGGAAAAUCUUACAGUGCAGCGGAAGCAAUGUUUUUCCGCAAUUGUUU--AACA--CAGCGGUGGUUAAUG--- -.....(((((((..........((((((((((.....))))).)))))((....))....)))))))((.((((((.--....--.)))))).)).....--- ( -25.30, z-score = -1.24, R) >droSec1.super_10 2979247 77 + 3036183 --AAGGAGGAAAAGUGCAAGAAAUGCGCGUGGGAAAAUCUUACAGUGCAGCGGAAGCAAUGUUUUUCCACAGCGGUAUU------------------------- --..(((((((...(((......((((((((((.....))))).)))))......)))...)))))))...........------------------------- ( -23.20, z-score = -2.63, R) >droYak2.chrX 16667560 98 - 21770863 -AAUGAGGAAAAAGUGCAAGAAAUGCGCGUGGGAAAAUUUUACAGUGCAGCGGAAGCACUGUUUUUUCGAAAUUGUUUAUAACA--CAGCGGUGGCUAAUU--- -...(((((((.(((((......(((((((((((...)))))).)))))......))))).)))))))(..((((((.......--.))))))..).....--- ( -24.10, z-score = -1.09, R) >droEre2.scaffold_4690 686599 93 + 18748788 UAAGGAGGAAAAAGCGCAAGAAAUGCGCGUGGGAAAAUCGUACAUUGCAGCGGAAGCACUGUUUUU--------GUUUAUAACAGACAGCAGUGGCUAAUU--- .............(((((.....)))))(((.(.....).)))...((.((....))(((((((((--------((.....))))).)))))).)).....--- ( -25.20, z-score = -2.00, R) >droAna3.scaffold_12613 428964 97 - 519072 --AAGGAAGAAAAUUGCAACAAAUGCGCGUGGGAAAAUCUGCAAAUGCAGCAGCAGCGGAAGC-----AAAAAAAUUAUAAACACUAGAGGCCAUUUAAAUAGG --..((.........(((.....)))..(((.......((((....)))).....((....))-----..............)))......))........... ( -16.00, z-score = 0.27, R) >consensus _AAGGAAGAAAAAGUGCAAGAAAUGCGCGUGGGAAAAUCUUACAGUGCAGCGGAAGCAAUGUUUUUCCGCAAUUGUUUAUAACA__CAGCGGUGGCUAAUU___ .............(((((.....)))))(((((.....)))))......((....))............................................... (-11.49 = -12.05 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:19 2011