| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,263,153 – 3,263,280 |
| Length | 127 |
| Max. P | 0.555914 |
| Location | 3,263,153 – 3,263,280 |
|---|---|
| Length | 127 |
| Sequences | 3 |
| Columns | 127 |
| Reading direction | reverse |
| Mean pairwise identity | 74.93 |
| Shannon entropy | 0.33588 |
| G+C content | 0.48830 |
| Mean single sequence MFE | -17.58 |
| Consensus MFE | -9.04 |
| Energy contribution | -9.93 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.555914 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3263153 127 - 22422827 UAUUUUGUAUUGUUUCGAAGGCAUUUGCCUGUAUCACAAUGCCUCCCCAGGCACCCUUUUAAUGCAUCCCCAAUGCCCACCCACCUUUCGCUUUCACUUUCACUUUCACCAUCGCUUCGUCCCCAUU ................((((((...((((((................))))))..........((((.....)))).............))))))................................ ( -17.99, z-score = -1.69, R) >droYak2.chrX 16656064 104 + 21770863 -------UACUUUUUGGGAGGCGUUUGCCU---------UGUAUCCCUCGACACCUUUUU-AUGCAUCCCCAAUGCCCACCCAAUUUUCACUUUUACUUUCACCU------UUCCUACGUCCCCAUU -------......(((((.((((((.(...---------(((((................-)))))...).))))))..))))).....................------................ ( -14.79, z-score = -1.79, R) >droSim1.chrX 2348955 111 - 17042790 ---------CUCUUUCGGAGGCGUUUGCCUGUAGCACAAUGCCUCCCCCGACACCCUUUU-AUGCAUCCCCAAUGCCCACCCACCUUUCGCUUUCACUUUCACCU------UCGCUUCGUACCCAUU ---------.......((((((((((((.....))).)))))))))..(((.........-..((((.....))))...........)))...............------................ ( -19.95, z-score = -2.84, R) >consensus _______UACUCUUUCGGAGGCGUUUGCCUGUA_CACAAUGCCUCCCCCGACACCCUUUU_AUGCAUCCCCAAUGCCCACCCACCUUUCGCUUUCACUUUCACCU______UCGCUUCGUCCCCAUU ................(((((((((............))))))))).................((((.....))))................................................... ( -9.04 = -9.93 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:18 2011