| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,248,423 – 3,248,514 |
| Length | 91 |
| Max. P | 0.615732 |
| Location | 3,248,423 – 3,248,514 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 61.57 |
| Shannon entropy | 0.62376 |
| G+C content | 0.35872 |
| Mean single sequence MFE | -17.59 |
| Consensus MFE | -7.71 |
| Energy contribution | -7.65 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.615732 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3248423 91 - 22422827 AAAUGUUUCAACUGCUGCUAUCUGUAUUUACGAAGAUGUUUUUCAAAUUAACGUCUCCGAUUGACAGGGAUUUUGAUUAGAAAUGAUUCCC ....(((((...........(((((.....((.(((((((.........))))))).))....)))))...........)))))....... ( -14.55, z-score = 0.03, R) >droEre2.scaffold_4690 661203 86 - 18748788 AAAUGUUUCAUUU--UGCUAUUGGUAUUUACGAAACUGUUUUCCAAAUUAACGUCCCUGAUUGACA---UUUUUGAUUGGGGACGUCUGUG ....(((((....--(((.....))).....)))))..........((..(((((((..((..(..---...)..))..)))))))..)). ( -22.70, z-score = -3.23, R) >droSec1.super_10 2953729 84 - 3036183 -AAUGUUUCAAU---AGCUAUCUGUAUUUACGAAGCUGUUUUUCAAAUUAACGUCUCCGAUUGACA---CUUUUGAUUAGGGAUGAUGCCG -..((....(((---((((.((.((....)))))))))))...))......((((((..((..(..---...)..))..))))))...... ( -16.00, z-score = -1.00, R) >droGri2.scaffold_15252 11956155 85 - 17193109 GAAAGAUUCAAA---UGUGACUUUGCUUGUUAGAGAUGUGCUGUGGAUUUGGCAUUUUAAUCGAUAGCCUUUGUGAUGGGAUCGGAUU--- ..........((---(.(((.....((..(((.(((.(.(((((.((((.........)))).))))))))).)))..)).))).)))--- ( -17.10, z-score = -0.10, R) >consensus AAAUGUUUCAAU___UGCUAUCUGUAUUUACGAAGAUGUUUUUCAAAUUAACGUCUCCGAUUGACA___UUUUUGAUUAGAGAUGAUUCCG ...................................................((((((..(((((........)))))..))))))...... ( -7.71 = -7.65 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:17 2011