| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,213,996 – 3,214,055 |
| Length | 59 |
| Max. P | 0.850590 |
| Location | 3,213,996 – 3,214,055 |
|---|---|
| Length | 59 |
| Sequences | 8 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 77.16 |
| Shannon entropy | 0.45276 |
| G+C content | 0.55177 |
| Mean single sequence MFE | -17.24 |
| Consensus MFE | -13.13 |
| Energy contribution | -13.24 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3213996 59 + 22422827 GGAAAGCGCCACAAAGUAUGCGAGGG--AAUCUGGCGACAUUGUUGCUCAACGCCGCCACC----- ((...(.((.((((.((.(((.((..--...)).))))).)))).)).)....))......----- ( -13.00, z-score = 0.86, R) >droSim1.chrU 5581369 59 - 15797150 GGAAAGCGCCACAAAGUAUGCCAGGG--AAUCUGGCGACAUUGUUGCUCACCGCCGCCACC----- ((..((((..((((.((.((((((..--...)))))))).))))))))..)).........----- ( -18.10, z-score = -0.91, R) >droSec1.super_10 2920455 58 + 3036183 -GGAAGCGCCACAAAGUAUGCCAGGG--AAUCUGGCGACAUUGUUGCUCACCGCCGCCACC----- -((..((((.((((.((.((((((..--...)))))))).)))).)).....))..))...----- ( -17.70, z-score = -0.76, R) >droYak2.chrX 16602379 64 - 21770863 GGAAAGCGGCACAAAGUAUGCCAGGG--AAUCUGGCGACAUUGUUGCUCUCUCCCCCACGCCACUC (((.((.(((((((.((.((((((..--...)))))))).))).)))))).)))............ ( -20.10, z-score = -1.32, R) >droEre2.scaffold_4690 625017 53 + 18748788 GGAAAGCGCCACAAAGUAUGCUAGGG--AAUCUGGCGACAUUGUUGCUCACCGCC----------- ((..((((..((((.((.((((((..--...)))))))).))))))))..))...----------- ( -15.80, z-score = -1.16, R) >droAna3.scaffold_12613 344139 62 - 519072 GAAAAGCGCCACAAAGUAAGCCGGGGGAAAACUGGCGACAUUGUUGCUCAUACCCAGCCACC---- .....(.((.((((.((..(((((.......))))).)).)))).)).).............---- ( -14.70, z-score = -0.02, R) >droWil1.scaffold_180588 1060827 52 + 1294757 --AGAGCGCCACAAAGUAUGCCAUGG--AAACUGGCGACAUUGUUGCUCGCGUCUA---------- --.(((((..((((.((.(((((.(.--...)))))))).))))))))).......---------- ( -19.50, z-score = -2.57, R) >droMoj3.scaffold_6308 2370058 58 + 3356042 GAAAAGUGCUACAAAGUAUGCCAUGG--UAAAUGGCGACAUUGUUGCGCACAACAGCAAC------ .....((((.((((.((.((((((..--...)))))))).)))).))))...........------ ( -19.00, z-score = -2.80, R) >consensus GGAAAGCGCCACAAAGUAUGCCAGGG__AAUCUGGCGACAUUGUUGCUCACCGCCGCCACC_____ .....(.((.((((.((.((((((.......)))))))).)))).)).)................. (-13.13 = -13.24 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:14 2011