| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,191,530 – 3,191,632 |
| Length | 102 |
| Max. P | 0.868240 |
| Location | 3,191,530 – 3,191,632 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 71.22 |
| Shannon entropy | 0.48379 |
| G+C content | 0.50162 |
| Mean single sequence MFE | -28.83 |
| Consensus MFE | -17.82 |
| Energy contribution | -17.42 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.868240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3191530 102 + 22422827 --ACACAACUCACUCACCCUUUCUGCAGCCUCGCUGAUCGUGCAGUGGUUAUAUUUUUAUGGCCAUGACUGUGCGACGCU----------UUAUGCAGUUGCUUUGGGCCUAUC --..............(((.....(((((........(((..(((((((((((....)))))))...))))..))).((.----------....)).)))))...)))...... ( -30.30, z-score = -1.88, R) >droEre2.scaffold_4690 601406 113 + 18748788 ACCCUUUUCUCGCCCCCUUUCUGCAGCCUCGCGUUGAUCGCGCAGUGGUUAUAUUUUUAUGACCAUGGCUGUGCGCUUAUCGCACGCGUUUUAUGCAGUUGCUUUAG-CUCAUC ...........((.......(((((....((((((((((((((((((((((((....)))))))...))))))))...)))).))))).....)))))........)-)..... ( -37.56, z-score = -3.84, R) >droYak2.chrX 16579185 112 - 21770863 ACUCACCACUCACUCACCUUUUAUGCAGCCUCGUUGAUCGUGCAGUGGUUGUAUUUUUAUGGCCAUGGCUGUGCGCUUAUCUGACAC-UUUUAUGCAGUUGCUUUAG-CUCAUC ........................((((((..((.......)).(((((..((....))..)))))))))))(.(((...(((.((.-.....))))).......))-).)... ( -22.90, z-score = 0.60, R) >droSec1.super_10 2898123 86 + 3036183 -----CAACACACUCACCCUU-CUGCAGCCUCGGUGAUCGUGCAGUGGUUAUAUUUUUAUGGCCAUGGCUGUGC----------------------AGUUGCUUUGGGCCCAUC -----................-.....((((.((..((.(..(((((((((((....)))))))...))))..)----------------------.))..))..))))..... ( -25.50, z-score = -0.35, R) >droSim1.chrX 2279243 86 + 17042790 -----CAACUCACUCACCCUU-CUGCAGCCUCGCUGAUCGUGCGGUGGUUAUAUUUUUAUGGCCAUGGCUGUGC----------------------AGUUGCUUUGGGCCCAUC -----...........(((..-..((((((.(((.......)))(((((((((....)))))))))))))))((----------------------....))...)))...... ( -27.90, z-score = -1.38, R) >consensus ___C_CAACUCACUCACCCUUUCUGCAGCCUCGCUGAUCGUGCAGUGGUUAUAUUUUUAUGGCCAUGGCUGUGCG____U__________UUAUGCAGUUGCUUUGGGCCCAUC ................(((.....((((((.....)...((((((((((((((....)))))))...))))))).......................)))))...)))...... (-17.82 = -17.42 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:10 2011