| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,165,649 – 3,165,741 |
| Length | 92 |
| Max. P | 0.970866 |
| Location | 3,165,649 – 3,165,741 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 65.58 |
| Shannon entropy | 0.63031 |
| G+C content | 0.47881 |
| Mean single sequence MFE | -17.44 |
| Consensus MFE | -9.16 |
| Energy contribution | -9.58 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.84 |
| SVM RNA-class probability | 0.970866 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3165649 92 + 22422827 ------CACCCUUAACCCCCCAACCCCCUCGCAACCAUCUAAUGGCUUCGU--UUGCUGACCCUCGAGCGUGUGUGUGUG--------AAUUUAAUUUGCCUCCUAAU ------......................(((((.((((...))))...(((--(((........))))))......))))--------)................... ( -9.70, z-score = 0.42, R) >droSim1.chrX 2254244 100 + 17042790 CACCCCCAUCCCUCAACCACUCACCACCUCACAUCCAUCUAAUGGGUCCGU--UUGCUGACCCUCGAGCGUGUGUGUGUGUG------AAUUUAAUUUGCCUCCUAAU ....................(((((((..(((((...((....(((((.(.--...).)))))..))..))))).))).)))------)................... ( -22.40, z-score = -2.56, R) >droSec1.super_10 2873176 100 + 3036183 CACCACCACCCCUCACCCCCUCACCACCUCACAUCCAUCUAAUGGGUCCGU--UUGCUGACCCUCGAGCGUGUGUGUGUGUG------AAUUUAAUUUGCCUCCUAAU ....................(((((((..(((((...((....(((((.(.--...).)))))..))..))))).))).)))------)................... ( -22.40, z-score = -2.49, R) >droYak2.chrX 16552977 77 - 21770863 ------------------------CACCCU-UACCCAUCUAAUGGGUCCGU--UUGCUGACCCUCGAGCGUGUGUGUGUGUGU----GAAUUUAAUUUGCCUCCUAAU ------------------------(((.(.-(((.(((((...(((((.(.--...).)))))...)).))).))).).))).----..................... ( -15.80, z-score = -1.56, R) >droEre2.scaffold_4690 574380 95 + 18748788 ------CACCCUUCACCCCU----CACAUC-CAUCUAUCUAAUGGGUUCGU--UUGCUGACCCUCGAGCGUGUGUGUGUGUGUGUGUGAAUUUAAUUUGCCUCCUAAU ------.....(((((.(..----((((..-(((.(((((...(((((.(.--...).)))))...)).))).)))..)))).).))))).................. ( -21.70, z-score = -2.23, R) >droWil1.scaffold_180588 1006797 87 + 1294757 ------AACCUAUUUGGAUCCUGCUACUAAAUACUUGCUUAUUCAGCACAUAGUUGUUGACCCUUAUUUGUAUUUGUGU-----------UUGAAACAGCCACC---- ------.......(((..((..((.((.((((((........((((((......)))))).........))))))))))-----------..))..))).....---- ( -12.63, z-score = -0.18, R) >consensus ______CACCCCUCACCCCC__ACCACCUCACAUCCAUCUAAUGGGUCCGU__UUGCUGACCCUCGAGCGUGUGUGUGUGUG______AAUUUAAUUUGCCUCCUAAU .............................(((((.(((((...(((((.((....)).)))))...)).))).))))).............................. ( -9.16 = -9.58 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:08 2011