| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,161,471 – 3,161,574 |
| Length | 103 |
| Max. P | 0.765094 |
| Location | 3,161,471 – 3,161,574 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 83.97 |
| Shannon entropy | 0.29902 |
| G+C content | 0.54722 |
| Mean single sequence MFE | -34.95 |
| Consensus MFE | -27.89 |
| Energy contribution | -27.50 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.765094 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3161471 103 - 22422827 --CCAG---ACCACUGCUUUCGAUUGACACGUAAACAGGGCCAAAAGCCG-GGCUAAGCGAUGCUACUAGAGCUGAGUGGUAUUGUCGACGUGUGGUUGGAGCACCACC- --....---.....(((((.(((((.((((((..((((.((((..((((.-(((........)))....).)))...)))).))))..)))))))))))))))).....- ( -33.00, z-score = -0.86, R) >droSim1.chrX 2250195 102 - 17042790 --CCAG---ACCACUGCUUUCGAUUGACACGUAAACAGGGCCAAAAGCCG-GGCUAAGCGAAGCUACUAGAGCUGAGUGGAAUUGUCGACGUGUGGUUGAGAGGCACC-- --.(((---....)))(((((((((.((((((..((((..(((..((((.-((((......))))....).)))...)))..))))..))))))))))))))).....-- ( -35.10, z-score = -2.04, R) >droSec1.super_10 2869170 102 - 3036183 --CCAG---ACCACUGCUCUCGAUUGACACGUAAACAGGGCCAAAAGCCG-GGCUAAGCAAAGCUACUAGAGCUGAGUGGGAUUGUCGACGUGUGGUUGAGAGGCACC-- --.(((---....)))(((((((((.((((((..((((..(((..((((.-((((......))))....).)))...)))..))))..))))))))))))))).....-- ( -36.70, z-score = -2.04, R) >droYak2.chrX 16548165 100 + 21770863 --CCAG---ACCGCUGCUUUCGAUUGACACGUAAACAGGGCCAAAAGCCG-GGCUAAGCGAAGCUACUACAGCUGAGUGGAAUUGUGGACGUGUGGUUGAGGCUCC---- --....---......((((.(((((.((((((..((((..(((..(((..-((((......))))......)))...)))..))))..)))))))))))))))...---- ( -31.70, z-score = -0.47, R) >droEre2.scaffold_4690 570064 100 - 18748788 --CCAAGCCGCCACUGGUUUCGAUUGACACGUAAACAGGGCCAAAAGCCC-GACUAAGCGAAGCUACUAGAGCUGAGUGGGAUUGUCGACGUGUGGUUGAGGC------- --....((((((...))).((((((.((((((.....((((.....))))-(((...((..((((.....))))..))......))).)))))))))))))))------- ( -32.20, z-score = -0.97, R) >droAna3.scaffold_12613 271179 107 + 519072 CCCCUG---UUCGCCACUUUCGAUUGACAUGUAAACAGGGCCAAAAGCCCUGGCUAAGCGAAGCCACUCGAGUUGAGUGGAGUUGUCGACGUGUGGUUGCGACUGGCACA ......---...((((.((.(((((.((((((...((((((.....)))))).....((((..((((((.....))))))..))))..))))))))))).)).))))... ( -41.00, z-score = -2.32, R) >consensus __CCAG___ACCACUGCUUUCGAUUGACACGUAAACAGGGCCAAAAGCCG_GGCUAAGCGAAGCUACUAGAGCUGAGUGGAAUUGUCGACGUGUGGUUGAGACGCACC__ .................((((((((.((((((..((((..(((..((((..((((......))))....).)))...)))..))))..))))))))))))))........ (-27.89 = -27.50 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:04 2011