| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,160,836 – 3,160,905 |
| Length | 69 |
| Max. P | 0.619165 |
| Location | 3,160,836 – 3,160,905 |
|---|---|
| Length | 69 |
| Sequences | 8 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 78.68 |
| Shannon entropy | 0.41995 |
| G+C content | 0.43289 |
| Mean single sequence MFE | -16.04 |
| Consensus MFE | -11.17 |
| Energy contribution | -11.07 |
| Covariance contribution | -0.09 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.619165 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3160836 69 - 22422827 ACUUAAUUACAUGGACGGUGUGUAAUGUUGUUGCCAUCGGCAACUCAGCGGUAACUUUUUCAUUUUCUA- ...........((((..(((.((..((((((((((...))))))..))))...)).....)))..))))- ( -12.50, z-score = -0.28, R) >droAna3.scaffold_12613 270191 64 + 519072 CCUUAAUUACAUGCCCAGCUUGUAAUUUAGUUGCCACUGGCAAC-----AGAAACUUUUUGCUUUUGGU- .((.(((((((.((...)).))))))).))..((((..(((((.-----((....)).)))))..))))- ( -14.60, z-score = -1.20, R) >droEre2.scaffold_4690 569361 69 - 18748788 ACUUAAUUACAUGGACGGUGUGUAAUGUUGUUGCCACCGGCAACUCAGAGGCAACUUUUUCAUUUUCUA- ..........((((((((((.(((((...)))))))))).......((((....)))))))))......- ( -15.60, z-score = -1.04, R) >droYak2.chrX 16546528 69 + 21770863 ACUUAAUUACAUGGACGGUGUGUAAUGUUGUUGUCACCGGCAACUCAGUGGCAACUUUUUCAUUUUCUA- .....(((((((.......)))))))...((((((((.(....)...))))))))..............- ( -15.60, z-score = -1.24, R) >droSec1.super_10 2868546 69 - 3036183 ACUUAAUUACAUGGACGGUGUGUAAUGUUGUUGCCACCGGCAACUCAGCGGCAACUUUUUCAUUUUCUA- ...........((((..(((......((((((((....(....)...)))))))).....)))..))))- ( -16.00, z-score = -1.11, R) >droSim1.chrX 2249539 69 - 17042790 ACUUAAUUACAUGGACGGUGUGUAAUGUUGUUGCCACCGGCAACUCAGCGGCAACUUUUUCAUUUUCUA- ...........((((..(((......((((((((....(....)...)))))))).....)))..))))- ( -16.00, z-score = -1.11, R) >dp4.chrXL_group1e 2680705 69 - 12523060 ACCUAAUUGCAUGCAGAGCGUGUACUUCUGUUGCCACUGGCAAC-CGUUGGUAACUUUCCCGAUUGGCCC ..((((((((((((...))))))......((((((((.(....)-.).)))))))......))))))... ( -19.00, z-score = -1.23, R) >droPer1.super_18 1581522 69 - 1952607 ACCUAAUUGCAUGCAGAGCGUGUACUUCUGUUGCCACUGGCAAC-CGUUGGUAACUUUCCCGAUUGGCCC ..((((((((((((...))))))......((((((((.(....)-.).)))))))......))))))... ( -19.00, z-score = -1.23, R) >consensus ACUUAAUUACAUGGACGGUGUGUAAUGUUGUUGCCACCGGCAACUCAGCGGCAACUUUUUCAUUUUCUA_ .....((((((((.....))))))))...((((((...(....).....))))))............... (-11.17 = -11.07 + -0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:03 2011