| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,145,932 – 3,146,035 |
| Length | 103 |
| Max. P | 0.723241 |
| Location | 3,145,932 – 3,146,035 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 61.52 |
| Shannon entropy | 0.53991 |
| G+C content | 0.34575 |
| Mean single sequence MFE | -20.48 |
| Consensus MFE | -11.71 |
| Energy contribution | -12.49 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.723241 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3145932 103 + 22422827 ----GUUCGUUUUUUUUUUU-----UUUUUUGUAGGGUUGCG-UUCGUGCGAAUUAUGUCAAUUGGGAUGCAAUGGUUCGAAAGUACAUAAUGACUUGGCAUUUUGCCAAGAG ----..(((((.........-----...........((((((-(((...................))))))))).((.(....).))..)))))((((((.....)))))).. ( -21.91, z-score = -0.47, R) >droEre2.scaffold_4690 551401 98 + 18748788 GCAUAUUUCUUUUAAUUUUCGAGCGUCAUUUCUUCACUUUUCGUUAGUGCGAAUUAUGACAAUUAGGAAGCAAUGAUUCGA---------------UGGCAUUUCGCCAAGAG .......(((........((((..((((((.((((.((.(((((....)))))...........)))))).))))))))))---------------((((.....))))))). ( -20.80, z-score = -1.01, R) >droYak2.chrX 16532116 103 - 21770863 ----GAAUAUUUUCGUCUUU-----UUAAUGUCUUUUUUCCACUUUACGCGUAUUAUGUCAAUUAGGAAGCAAUGAUUCGAAAAUACAUAAUUACUUGGCAUUUUGCCAAGA- ----...((((((((.....-----(((.(((.....((((.......((((...))))......))))))).)))..))))))))........((((((.....)))))).- ( -18.72, z-score = -1.57, R) >consensus ____GUUUAUUUUAAUUUUU_____UUAUUUCUUCACUUCCA_UUAGUGCGAAUUAUGUCAAUUAGGAAGCAAUGAUUCGAAA_UACAUAAU_ACUUGGCAUUUUGCCAAGAG .................................................((((((((...............))))))))..............((((((.....)))))).. (-11.71 = -12.49 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:01 2011