Locus 12903

Sequence ID dm3.chrX
Location 3,144,809 – 3,144,923
Length 114
Max. P 0.889171
window17742

overview

Window 2

Location 3,144,809 – 3,144,923
Length 114
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 86.05
Shannon entropy 0.19112
G+C content 0.55145
Mean single sequence MFE -37.60
Consensus MFE -30.59
Energy contribution -29.93
Covariance contribution -0.65
Combinations/Pair 1.17
Mean z-score -2.09
Structure conservation index 0.81
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.09
SVM RNA-class probability 0.889171
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 3144809 114 - 22422827
AGAUGUGGCUUUCGAUGCGGCUUUCGGUUUCGGGUCGGAUUUACACUUGGGUGCAGGCUUGCACGAAGCUUGAGACUUCGAUUUGGAAUCGGGGCACUUCGGUGUUAGCAGGUC
....((.((.......)).))..((((((((((((((((....(((....)))(((((((.....)))))))....))))))))))))))))(((((....)))))........ ( -38.30, z-score =  -1.54, R)
>droSec1.super_10 2853203 109 - 3036183
-----GAGUUUUCGGUGUGGCUUUUGGUUUCGGUUCGGGCUUACACUUGGGUACAGGCUUGCACGGGGCUUGAGGCUUCGGUUCGGAAUUGGGGCACUUCGGUGUUAGCAGGUC
-----....((((((...((((((.(((..((...(((((((..((....))..)))))))..))..))).)))))).....))))))(((.(((((....)))))..)))... ( -35.60, z-score =  -1.69, R)
>droSim1.chrX 2233949 109 - 17042790
-----GAGUUUUCGAUGGGGCUUUUGGUUUCGGUUCGGGUUUACACUUGGGUACAGGCUUGCACGGGGCUUGAGGCUUCGGCUCGGAUUUGGGGCACUUCGGUGUUAGCAGGUC
-----((((......(((((((((.(((..((...(((((((..((....))..)))))))..))..))).))))))))))))).((((((.(((((....)))))..)))))) ( -38.90, z-score =  -3.05, R)
>consensus
_____GAGUUUUCGAUGCGGCUUUUGGUUUCGGUUCGGGUUUACACUUGGGUACAGGCUUGCACGGGGCUUGAGGCUUCGGUUCGGAAUUGGGGCACUUCGGUGUUAGCAGGUC
.......((((((((((..(((((.(((((((...(((((((..((....))..)))))))..))))))).)))))..))..))))).....(((((....))))))))..... (-30.59 = -29.93 +  -0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:11:00 2011