| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,123,999 – 3,124,059 |
| Length | 60 |
| Max. P | 0.784521 |
| Location | 3,123,999 – 3,124,059 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 93.20 |
| Shannon entropy | 0.11659 |
| G+C content | 0.52402 |
| Mean single sequence MFE | -16.78 |
| Consensus MFE | -15.42 |
| Energy contribution | -15.46 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784521 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3123999 60 + 22422827 CAAUUCCGGCGGAAUGUCGGAAUCCGGACAAUUCGCAAGUCCAAAGUAGCGGGGCAAAUA ........(((((.((((.(....).)))).)))))..((((.........))))..... ( -16.80, z-score = -1.34, R) >droSim1.chrX 2210243 58 + 17042790 CAAUUCUGGCGGAAUGUCGGAAUCCGGACAAUUCGCAAGUCCAAAGUAGCGGGGCAAA-- ........(((((.((((.(....).)))).)))))..((((.........))))...-- ( -16.80, z-score = -1.63, R) >droSec1.super_10 2835459 58 + 3036183 CAAUUCCGGCGGAAUGUCGGAAUCCGGACAAUUCGCAAGUCCAAAGUAGCGGGGCAAA-- ........(((((.((((.(....).)))).)))))..((((.........))))...-- ( -16.80, z-score = -1.29, R) >droYak2.chrX 16510496 58 - 21770863 CAGUUCCGGCGGAAUGUCGGAAUCCGGACAAUUCGUAAGUCCACAAAAGCGGGGCAAA-- ..(((((((((((.((((.(....).)))).)))))..(....).....))))))...-- ( -17.80, z-score = -1.76, R) >droEre2.scaffold_4690 533113 58 + 18748788 CAAUUCCGGCGGAAUGUCGGAAUCCGGACAAUUCGCAAGUCAACAAUAGCGGGGCAAA-- ...((((((((((.((((.(....).)))).)))))..(....).....)))))....-- ( -15.70, z-score = -1.56, R) >consensus CAAUUCCGGCGGAAUGUCGGAAUCCGGACAAUUCGCAAGUCCAAAGUAGCGGGGCAAA__ ........(((((.((((.(....).)))).)))))..((((.........))))..... (-15.42 = -15.46 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:59 2011