| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,105,999 – 3,106,089 |
| Length | 90 |
| Max. P | 0.938658 |
| Location | 3,105,999 – 3,106,089 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 64.48 |
| Shannon entropy | 0.70462 |
| G+C content | 0.37468 |
| Mean single sequence MFE | -17.74 |
| Consensus MFE | -7.11 |
| Energy contribution | -6.92 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.73 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.938658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3105999 90 - 22422827 ----UACUUUUUCCACCCGGCGAACUGUGCGUAUACACAUUUA--AAUACGUAUACGACAUGCUGGCACUUUGAAGCAUUCUUUAAAUAUUUGCAA-- ----............((((((...(((.(((((((.......--.....))))))))))))))))...(((((((....))))))).........-- ( -18.50, z-score = -1.97, R) >droSim1.chrX_random 1443137 93 - 5698898 UACUUUUUUUUUCCACCCGGC-AACUGUGCGUAUACACAUUUA--AAUACGUAUACGACAUGCUGGCUCUUUGAAGCAUUCUUUAAAUAUUUGCAG-- ................(((((-(..(((.(((((((.......--.....))))))))))))))))...(((((((....))))))).........-- ( -19.60, z-score = -2.75, R) >droSec1.super_10 2826679 92 - 3036183 UAC-UUUUUUUUCCACCCGGC-AACUGUGCGUAUACACAUUUA--AAUACGUAUACGACAUGCUGGCUCUUUGAAGCAUUCUUUAAAUAUUUGCAG-- ...-............(((((-(..(((.(((((((.......--.....))))))))))))))))...(((((((....))))))).........-- ( -19.60, z-score = -2.73, R) >droYak2.chrX 16501115 89 + 21770863 ----UACUUUUUUCGCCCGGC-AACUGUGCGUAUACACAUUUA--AAUACGUAUACGACAAGCUGGCUCUUUGAAGCAUUCUUUAAAUAUUUGCAG-- ----..........(((((((-...(((.(((((((.......--.....)))))))))).)))))...(((((((....))))))).....))..-- ( -19.50, z-score = -2.00, R) >droEre2.scaffold_4690 523991 90 - 18748788 ---UACCUUUUAACACCCGGC-AACGGUGCGUAUACACAUUUA--AAUAAGUAUACGACAUGCUGGCUCUUUGAAGCAUUCUUUAAAUAUUUGCAG-- ---.....(((((...(((((-(...((.(((((((.......--.....))))))))).))))))....)))))(((.............)))..-- ( -19.02, z-score = -1.90, R) >droAna3.scaffold_13417 2169384 92 + 6960332 ----CAGUUUUUCGGUACAACUUACAAAAAUUCUGUCAUCGCUUUUCCAAAAAAAAGACAAUUCAAC-CUAGCGAGCGCUC-CGGAGUACCUGUGUGU ----(((..(((..(((.....)))..)))..)))...(((((........................-..)))))((((.(-.((....)).).)))) ( -13.17, z-score = 0.73, R) >droWil1.scaffold_180588 345697 92 + 1294757 ----UAAUUUAUCGACUUUUCUCACAGUGUGGAUGAAUUUUUAUUGUAAACUCUCCGAUAAAGGUCUGCCGAUAAGUAGUGUUUCAUUAUUUGCCU-- ----.((((((((.((............)).))))))))(((((((.........)))))))((....))(.(((((((((...))))))))).).-- ( -14.80, z-score = -0.17, R) >consensus ____UACUUUUUCCACCCGGC_AACUGUGCGUAUACACAUUUA__AAUACGUAUACGACAUGCUGGCUCUUUGAAGCAUUCUUUAAAUAUUUGCAG__ ................(((((........(((((((..............)))))))....))))).........(((.............))).... ( -7.11 = -6.92 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:57 2011