| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,834,175 – 9,834,231 |
| Length | 56 |
| Max. P | 0.524021 |
| Location | 9,834,175 – 9,834,231 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 94.40 |
| Shannon entropy | 0.10839 |
| G+C content | 0.34232 |
| Mean single sequence MFE | -9.60 |
| Consensus MFE | -8.95 |
| Energy contribution | -8.82 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524021 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9834175 56 + 23011544 GUCGUAAAGUUAACAUCAAGGAUUCAUUGAUAUUGUAGGUCUUUGAACAAGUUUCU ...............((((((((..((.......))..)))))))).......... ( -8.80, z-score = -0.78, R) >droAna3.scaffold_12943 1271801 53 + 5039921 CUCGUAAAGUUGGCAUCAAAGAUUCAUUGAUAUUGUAGGUCUUUGAACAAGUU--- ......((.(((...((((((((..((.......))..)))))))).))).))--- ( -10.30, z-score = -1.51, R) >droEre2.scaffold_4929 10446094 56 + 26641161 GUCGUAAAGUUGGCAUCAAGGAUUCAUUGAUAUAGUAGGUCUUUGAACAAGUUUCU ((((......)))).((((((((..((((...))))..)))))))).......... ( -12.10, z-score = -2.17, R) >droYak2.chr2L 12522141 56 + 22324452 GUCGUAAAGUUAGCAUCAAGGAUUCAUUGAUAUUGUAGGUCUUUGAACAAGUUCCU ...............((((((((..((.......))..)))))))).......... ( -8.80, z-score = -0.64, R) >droSec1.super_3 5280732 56 + 7220098 GUCGUAAAGUUAGCAUCAAGGAUUCAUUGAUAUUGUAGGUCUUUGAACAAGUUUCU ...............((((((((..((.......))..)))))))).......... ( -8.80, z-score = -0.76, R) >droSim1.chr2L 9615405 56 + 22036055 GUCGUAAAGUUAGCAUCAAGGAUUCAUUGAUAUUGUAGGUCUUUGAACAAGUUUCU ...............((((((((..((.......))..)))))))).......... ( -8.80, z-score = -0.76, R) >consensus GUCGUAAAGUUAGCAUCAAGGAUUCAUUGAUAUUGUAGGUCUUUGAACAAGUUUCU ...............((((((((..((.......))..)))))))).......... ( -8.95 = -8.82 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:04 2011