Locus 12899

Sequence ID dm3.chrX
Location 3,101,146 – 3,101,266
Length 120
Max. P 0.870281
window17736 window17737

overview

Window 6

Location 3,101,146 – 3,101,265
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.81
Shannon entropy 0.08858
G+C content 0.45129
Mean single sequence MFE -36.49
Consensus MFE -33.34
Energy contribution -33.62
Covariance contribution 0.28
Combinations/Pair 1.10
Mean z-score -1.79
Structure conservation index 0.91
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.90
SVM RNA-class probability 0.847899
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 3101146 119 + 22422827
UUGUCUAGCUUGCGAAAGUUUUUGAGCUCUGUUUUCCAAA-CUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGACAGCAGACCAAAAGCUGACGGCUGCGACACUCGAUAGCGGGAAA
.((((((((...((..((((((((.(.((((((.(((((.-........(((((((....)))))))....))))).)))))))))))))))..)))))).))))((((....))))... ( -39.12, z-score =  -2.60, R)
>droSim1.chrU 3438932 119 - 15797150
UUGUCUAGCUUGCGAAAGUUUUUGAGCUCUGUUUUCCAAA-CUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGACAGCAGACCAAAAGCUGACGGCUGCGACACUCGAUAGCGGGAAA
.((((((((...((..((((((((.(.((((((.(((((.-........(((((((....)))))))....))))).)))))))))))))))..)))))).))))((((....))))... ( -39.12, z-score =  -2.60, R)
>droSec1.super_10 2822038 119 + 3036183
UUGUCUAGCUUGCGAAAGUUUUUGAGCUCUGUUUUCCAAA-CUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGACAGCAGACCAAAAGAUGACGGCUGCGACACUCGAUAGCGGGAAA
.(((((((((.((....))(((((.(.((((((.(((((.-........(((((((....)))))))....))))).))))))))))))......))))).))))((((....))))... ( -35.62, z-score =  -1.91, R)
>droYak2.chrX 16496563 119 - 21770863
UUGUCUAGCUUGCGAAAGUUUUCGAGCUCUGUUUUCCAAA-CUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGGCAGCGUACCGAAAUCUGACGGCUGCGACACUUAAUAGCGGGAAA
......(((((((....))....)))))...((((((...-........(((((((....)))))))..(((((((...(((((((........))).))))...)))))))..)))))) ( -30.90, z-score =  -0.27, R)
>droEre2.scaffold_4690 519336 120 + 18748788
UCCUCUAGCUUGCGAAAGUUUUCGAGCUCUGUUUUCCAAAACUUUCAAAUUGCUGUCAUCACAGCAGGAUAUUGGGCAGCGGACCGAAAUCUGACGGCUGCGACACUCGAUAGCGGGAAA
........((((((((((((((.(((.......))).)))))))))...(((((((....)))))))..(((((((..((((.(((........)))))))....))))))))))))... ( -37.70, z-score =  -1.58, R)
>consensus
UUGUCUAGCUUGCGAAAGUUUUUGAGCUCUGUUUUCCAAA_CUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGACAGCAGACCAAAAGCUGACGGCUGCGACACUCGAUAGCGGGAAA
.((((((((...((..((((((((.(.((((((.(((((..........(((((((....)))))))....))))).)))))))))))))))..)))))).))))((((....))))... (-33.34 = -33.62 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 3,101,147 – 3,101,266
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.81
Shannon entropy 0.08858
G+C content 0.45129
Mean single sequence MFE -36.53
Consensus MFE -33.18
Energy contribution -33.46
Covariance contribution 0.28
Combinations/Pair 1.10
Mean z-score -1.85
Structure conservation index 0.91
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.00
SVM RNA-class probability 0.870281
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 3101147 119 + 22422827
UGUCUAGCUUGCGAAAGUUUUUGAGCUCUGUUUUCCAAA-CUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGACAGCAGACCAAAAGCUGACGGCUGCGACACUCGAUAGCGGGAAAA
((((((((...((..((((((((.(.((((((.(((((.-........(((((((....)))))))....))))).)))))))))))))))..)))))).))))((((....)))).... ( -38.92, z-score =  -2.57, R)
>droSim1.chrU 3438933 119 - 15797150
UGUCUAGCUUGCGAAAGUUUUUGAGCUCUGUUUUCCAAA-CUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGACAGCAGACCAAAAGCUGACGGCUGCGACACUCGAUAGCGGGAAAA
((((((((...((..((((((((.(.((((((.(((((.-........(((((((....)))))))....))))).)))))))))))))))..)))))).))))((((....)))).... ( -38.92, z-score =  -2.57, R)
>droSec1.super_10 2822039 119 + 3036183
UGUCUAGCUUGCGAAAGUUUUUGAGCUCUGUUUUCCAAA-CUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGACAGCAGACCAAAAGAUGACGGCUGCGACACUCGAUAGCGGGAAAA
(((((((((.((....))(((((.(.((((((.(((((.-........(((((((....)))))))....))))).))))))))))))......))))).))))((((....)))).... ( -35.42, z-score =  -1.89, R)
>droYak2.chrX 16496564 119 - 21770863
UGUCUAGCUUGCGAAAGUUUUCGAGCUCUGUUUUCCAAA-CUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGGCAGCGUACCGAAAUCUGACGGCUGCGACACUUAAUAGCGGGAAAA
.....(((((((....))....)))))...((((((...-........(((((((....)))))))..(((((((...(((((((........))).))))...)))))))..)))))). ( -31.70, z-score =  -0.54, R)
>droEre2.scaffold_4690 519337 120 + 18748788
CCUCUAGCUUGCGAAAGUUUUCGAGCUCUGUUUUCCAAAACUUUCAAAUUGCUGUCAUCACAGCAGGAUAUUGGGCAGCGGACCGAAAUCUGACGGCUGCGACACUCGAUAGCGGGAAAA
.......((((((((((((((.(((.......))).)))))))))...(((((((....)))))))..(((((((..((((.(((........)))))))....)))))))))))).... ( -37.70, z-score =  -1.69, R)
>consensus
UGUCUAGCUUGCGAAAGUUUUUGAGCUCUGUUUUCCAAA_CUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGACAGCAGACCAAAAGCUGACGGCUGCGACACUCGAUAGCGGGAAAA
((((((((...((..((((((((.(.((((((.(((((..........(((((((....)))))))....))))).)))))))))))))))..)))))).))))((((....)))).... (-33.18 = -33.46 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:56 2011