| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,051,613 – 3,051,703 |
| Length | 90 |
| Max. P | 0.973607 |
| Location | 3,051,613 – 3,051,703 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 81.01 |
| Shannon entropy | 0.35630 |
| G+C content | 0.37904 |
| Mean single sequence MFE | -20.66 |
| Consensus MFE | -12.00 |
| Energy contribution | -12.50 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.973607 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3051613 90 - 22422827 ----GUUUUUAGCAUAGAAACAUCAUAAAGUCCCCAAAUCGAAUAUGAAAUUUAUGCUAAUUGCC---------CUGCCAGCCAUUCAACAGUGGCAGAAGAU ----((..((((((((((....(((((...((........)).)))))..))))))))))..)).---------((((((............))))))..... ( -21.70, z-score = -3.66, R) >droPer1.super_18 1454920 101 - 1952607 --GAAUAUUUAGCAUGGAAACAUCAUAAAAAUCUCAAAUCGAAUGGUUAGUUUAUGCAAAUCGGUAGCAGGAGAGCGAGAGCCAUUCAACAGUGGCAGAAGAU --.....((((..(((....)))..))))..((((..(((((...((........))...))))).((......))))))(((((......)))))....... ( -22.10, z-score = -2.00, R) >dp4.chrXL_group1e 2556736 101 - 12523060 --GAAUAUUUAGCAUGGAAACAUCAUAAAAAUCUCAAAUCGAAUGGUUAGUUUAUGCAAAUCGGUAGCAGGAGAGGGAGGGCCAUUCAACAGUGGCAGAAGAU --.....((((..(((....)))..))))..((((..(((((...((........))...))))).....))))......(((((......)))))....... ( -19.30, z-score = -1.15, R) >droAna3.scaffold_12613 151286 94 + 519072 GGUUUAGUUUAGCAUAGAAACAUCAUAAAGACCACAAAUCGAAUAUGAAAUUUAUGCAAAUUGUC---------CAGUAAACCAUUCAACGGUGGCAGAAGAU ((..((((((.(((((((....(((((..((.......))...)))))..))))))))))))).)---------)......((((......))))........ ( -16.00, z-score = -1.32, R) >droEre2.scaffold_4690 477860 93 - 18748788 -GUUUUUUUCAGCAUAGAAACAUCAUAAAGUCCCCAAAUCGAAUAUGAAAUUUAUGCAAAUUGCC---------CUGCCAGCCAUUCAACAGUGGCAGAAGAU -....(((((.(((((((....(((((...((........)).)))))..)))))))....((((---------(((............))).))))))))). ( -19.10, z-score = -2.40, R) >droYak2.chrX 16454148 90 + 21770863 ----GCUUUUAGCAUAGAAACAUCAUAAAGUCCCCAAAUCGAAUAUGAAAUUUAUGCAAAUUACC---------CUGCCAGCCAUUCAACAGUGGCAGAAGAU ----.(((((.(((((((....(((((...((........)).)))))..)))))))........---------......(((((......)))))))))).. ( -18.30, z-score = -2.92, R) >droSec1.super_10 2781449 90 - 3036183 ----GCUUUUAGCAUAGAAACAUCAUAAAGUCGCCAAAUCGAAUAUGAAAUUUAUGCUAAUUGCC---------CUGCCAGCCAUUCAACAGUGGCAGAAGAU ----((..((((((((((....(((((...(((......))).)))))..))))))))))..)).---------((((((............))))))..... ( -25.50, z-score = -3.96, R) >droSim1.chrX_random 1430057 90 - 5698898 ----GCUUUUAGCAUAGAAACAUCAUAAAGUCCCCAAAUCGAAUAUGAAAUUUAUGCUAAUUGCC---------CUGCCAGCCAUUCAACAGUGGCAGAAGAU ----((..((((((((((....(((((...((........)).)))))..))))))))))..)).---------((((((............))))))..... ( -23.30, z-score = -3.85, R) >consensus ____GUUUUUAGCAUAGAAACAUCAUAAAGUCCCCAAAUCGAAUAUGAAAUUUAUGCAAAUUGCC_________CUGCCAGCCAUUCAACAGUGGCAGAAGAU ...........(((((((....(((((................)))))..))))))).......................(((((......)))))....... (-12.00 = -12.50 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:50 2011