| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,041,091 – 3,041,167 |
| Length | 76 |
| Max. P | 0.788479 |
| Location | 3,041,091 – 3,041,167 |
|---|---|
| Length | 76 |
| Sequences | 7 |
| Columns | 80 |
| Reading direction | forward |
| Mean pairwise identity | 73.85 |
| Shannon entropy | 0.48705 |
| G+C content | 0.48985 |
| Mean single sequence MFE | -19.65 |
| Consensus MFE | -9.95 |
| Energy contribution | -10.69 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.788479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3041091 76 + 22422827 --UCUUUGCAGCUUUGCAGGAAAUCGCCACACGCCCAAUUAGCAAACA--UAUAUAGAGCACAGUUGGGCGCAAGAUAUU --..........(((((.((......))....((((((((.((.....--........))..)))))))))))))..... ( -18.02, z-score = -1.21, R) >droSim1.chrX 2180157 71 + 17042790 --UCUUUGCAGC---GCAGGAAAUCGCCACACGCCCAAUUAGCAAACA--UAUAUA--GCACAGUUGGGCGCAAGAUAUU --..(((((.((---(........))).....((((((((.((.....--......--))..)))))))))))))..... ( -18.80, z-score = -2.14, R) >droYak2.chrX 16443270 75 - 21770863 --UUUUUCCAGC---GCAGGAAAUCGCCACACGCCCAAUUAGCAAACACAUAUAUAUAGCACAGUUGGGCGCAAGAGAAU --.(((((..((---...((......))....((((((((.((...............))..))))))))))..))))). ( -18.16, z-score = -2.99, R) >droEre2.scaffold_4690 467182 71 + 18748788 --UUUUUCCAGC---GCAGGAAAUGGCCACACGCCCAAUUAGCAAAC----AUAUAUAGCACAGUUGGGCGCAAAAUAAU --..(((((...---...)))))........(((((((((.((....----.......))..)))))))))......... ( -17.50, z-score = -1.90, R) >droMoj3.scaffold_6308 2116592 74 + 3356042 CCCUUUGGUCGC-UGGCAGGAAAUCGCCACACGCCCAAUUAGCAAACA-----UUGGGGCGCUUUGGCGUGCGGCACGUU .......(((((-((((........))))....((((((........)-----)))))((((....)))))))))..... ( -24.30, z-score = 0.39, R) >droVir3.scaffold_12726 429499 71 + 2840439 --UGCCUGUCG--UGGCAGGAAAUCGCCACACGCCCAAUUAGCAAACA-----UUGGGGCGAUUUGGCGCGCGGCACGUU --.((.(((((--((((...((((((((......(((((........)-----)))))))))))).)).))))))).)). ( -26.10, z-score = -0.59, R) >droSec1.super_10 2771129 59 + 3036183 -----------------AGGAAAUCGCCACACGCCCAAUUAGCAAAC----AUAUAUAGCACAGUUGGGCGCAAGAUAUU -----------------.((......))...(((((((((.((....----.......))..)))))))))......... ( -14.70, z-score = -2.91, R) >consensus __UUUUUGCAGC___GCAGGAAAUCGCCACACGCCCAAUUAGCAAACA___AUAUAGAGCACAGUUGGGCGCAAGAUAUU ..................((......))...((((((((..((...............))...))))))))......... ( -9.95 = -10.69 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:48 2011