| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,037,878 – 3,037,973 |
| Length | 95 |
| Max. P | 0.672248 |
| Location | 3,037,878 – 3,037,973 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 83.94 |
| Shannon entropy | 0.21266 |
| G+C content | 0.31391 |
| Mean single sequence MFE | -22.37 |
| Consensus MFE | -10.79 |
| Energy contribution | -11.19 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.672248 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3037878 95 - 22422827 UCGAAUAUCAUUAAAAAGUUCGAUCGUUUGUUAUUAAAAGGUGAAGGUAAACUCUUCUUUAGUUGCAAGUUGUAUACUUUUUUGUGUUAUAUUUA ..(((((((((.(((((((...((..(((((.((((((....(((((.....))))))))))).)))))..))..))))))).)))..)))))). ( -18.10, z-score = -2.17, R) >droSim1.chrX 2161699 84 - 17042790 UCGAAU--------AAAUUUCGAUCG-AUGUUAUUGAAAGGUGAAGGC-AACUCGUCUUUAGUUGCAAGUUGCAU-CUUUUUUGCAUUGGAUUUA (((((.--------....)))))(((-((((....((((((((...((-((((.......))))))......)))-)))))..)))))))..... ( -24.50, z-score = -3.24, R) >droSec1.super_10 2767869 84 - 3036183 UCGAAU--------AAAUUUCGAUCG-AUGUUAUUGAAAGGUGAAGGC-AACUCGUCUUUAGUUGCAAAUUGCAU-CUUUUUUGCAUUGGAUUUA (((((.--------....)))))(((-((((....((((((((((.((-((((.......))))))...)).)))-)))))..)))))))..... ( -24.50, z-score = -3.42, R) >consensus UCGAAU________AAAUUUCGAUCG_AUGUUAUUGAAAGGUGAAGGC_AACUCGUCUUUAGUUGCAAGUUGCAU_CUUUUUUGCAUUGGAUUUA (((((.............)))))..(((((..(((...((.(((((((......))))))).))...)))..))))).................. (-10.79 = -11.19 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:47 2011