| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,822,467 – 9,822,566 |
| Length | 99 |
| Max. P | 0.599408 |
| Location | 9,822,467 – 9,822,566 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 71.70 |
| Shannon entropy | 0.49373 |
| G+C content | 0.52645 |
| Mean single sequence MFE | -24.76 |
| Consensus MFE | -13.90 |
| Energy contribution | -13.86 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.599408 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9822467 99 + 23011544 CCAACACCAUCACGAGCUAGAUGGCAAUCAGCAGGACGAAAGAAGGAACGAGGACAUGCUGAAGGAGUAACCUUUGGUUAGCCACGACUACGUGGUGAC-- .......(((((((.(((.(((....))))))((..(....)......((.((....((..((((.....))))..))...)).)).)).)))))))..-- ( -29.20, z-score = -2.60, R) >droAna3.scaffold_12943 1260250 83 + 5039921 -----------------CGGGUUGCUGGCAGCCGAAAGGAAGUGGCAG-AAGGAGGAGUCGAAGGAGUAACCUUUGGUUAACCACGAGCACGUUGUCGGGC -----------------.......(((((((((....)...((((..(-((((...(.((....)).)..)))))......))))......)))))))).. ( -24.50, z-score = -0.66, R) >droYak2.chr2L 12509228 95 + 22324452 UCGUUCUCAUCAGCAGAUAGAUGGCAAUCAGCAGGAGGAGCAGAGGAA----GACAUGCUGAAGGAGUAACCUUUGGUUAGCCACGACUACGUGGUGGC-- ..(((((((((........))))((.....))....))))).......----.....((..((((.....))))..))..(((((.((...)).)))))-- ( -25.10, z-score = -0.23, R) >droSec1.super_3 5269022 87 + 7220098 ------------UCAGCUAGAUGGCAAUCAGCAGGAUGAAAGGAGGAACGAGGACAUGCUGAAGGAGUAACCUUUGGUUAGCCACGACUACGUGGUGAC-- ------------..(((((((.((...((..(((.(((...(......).....))).)))...))....))))))))).((((((....))))))...-- ( -21.90, z-score = -1.03, R) >droSim1.chr2L 9603823 87 + 22036055 ------------UCAGCUAGAUGGCAAUCAGCAGGACGAAAGGAGGAACGAGGACAUGCUGAAGGAGUAACCUUUGCUUAGCCACGACUACGUGGUGAC-- ------------..........((((((((((((..(....(......)..)..).))))))(((.....))))))))..((((((....))))))...-- ( -23.10, z-score = -1.24, R) >consensus ____________UCAGCUAGAUGGCAAUCAGCAGGACGAAAGGAGGAACGAGGACAUGCUGAAGGAGUAACCUUUGGUUAGCCACGACUACGUGGUGAC__ .......................((.....)).........................((((((((.....))))))))..((((((....))))))..... (-13.90 = -13.86 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:03 2011